Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b19
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    50   2e-07
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    29   0.58 
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    27   1.8  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    27   1.8  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    26   4.1  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   5.4  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   7.2  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   9.5  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 29/102 (28%), Positives = 46/102 (45%)
 Frame = +1

Query: 142 MKAVLATVISLALTTVVIGNAYYQKKQFYPSIVYLTNSNPSMAVMYLQAFILVLLVGKML 321
           MK +L  + SL L  + +  + Y     Y + V ++ S   + +       L   +   L
Sbjct: 1   MKFILYVLASLVLFGLSVLLSLYSSANVYSATVMISQSPVHITIGLNVCLCLFFAIANAL 60

Query: 322 RKIFFGQLRPAEFEHLIERSWYAXTETCLAFTVFRDDFNPKF 447
           + + FG L+  E E L E+ W   TE  LA TVFR+  +  F
Sbjct: 61  KTLLFGSLQTFELELLYEQFWITLTEIMLAITVFREAISISF 102


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +1

Query: 13  RRTYDMMF*KCF*ELLIYFGVHRNLINEAHEDIISKELLKTIKMKA-VLATVISLALTTV 189
           RRT D +  K +   +++F      + E    ++S     +++  +   A V++L L   
Sbjct: 162 RRTLDQIAAKLYFYYILFFEKCNRSV-ECRNTLLSVHRTASLRHDSETQAMVLTLLLRNY 220

Query: 190 VIGNAYYQKKQFYPSIVYLTNSNPSMAVMY 279
           +  N Y Q  +      +LTN++ ++A+ Y
Sbjct: 221 IQFNLYDQADRLVSKTSFLTNASNNLAIRY 250


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 249 KFKSKHGSDVFASVYFS-FIGGKNAKENILWSTS 347
           KF+++HG DV   V  +   GG     +++W  S
Sbjct: 59  KFRAEHGQDVIGEVTINQMYGGARGVRSLIWEGS 92


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
 Frame = +1

Query: 88  INEAHEDIISKELLK--TIKMKA----VLATVISLALTTVVIGNAYYQKKQFYP--SIVY 243
           ++E   D+ SK + K  ++++ +    + +TVIS +L+TVVIGN    K + YP  S   
Sbjct: 372 VDEEDTDVQSKPVRKNPSVELNSTDTLLSSTVISKSLSTVVIGNE-TGKSESYPATSTRS 430

Query: 244 LTNSNPSMAVMYLQAFI 294
             + +PS +  Y  A I
Sbjct: 431 FNDISPSSSSSYSTAQI 447


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 129 KNYQNEGS--VSDGDQSRANHCGYRQCILPKETVLPFDSLFNKFKSK 263
           +NY  EG   V    +++ +H GY +CIL  ++   ++    K  S+
Sbjct: 276 RNYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSE 322


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 377 LSIKCSNSAGRS*PKNIFLSI 315
           L ++CS+   +S PKN+FLS+
Sbjct: 335 LYLRCSSCKLKSIPKNVFLSL 355


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 148 AVLATVISLALTTVVIGNAYYQKKQ 222
           +VLAT++S A T ++IG+  Y  ++
Sbjct: 238 SVLATLLSFAPTLLIIGSVIYLSRR 262


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 223 FYPSIVYLTNSNPSMAVMYLQAFILVLLVGKMLRKIFFGQLRPAEFE 363
           FYP  + + N  P++A+MY       ++ G M       Q +  EFE
Sbjct: 221 FYP--LSIINDEPNLALMYRLKSFAKVIDGLMDEAFSIAQAQGCEFE 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,408
Number of Sequences: 5004
Number of extensions: 36949
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)