Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3b19
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832... 73 1e-13
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 30 1.3
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 29 1.8
11_01_0696 + 5735466-5735550,5735897-5735935,5737292-5737345,573... 28 4.1
05_05_0138 + 22644263-22644460,22644617-22644711,22645786-226459... 28 5.4
01_05_0256 - 19994072-19995268 27 7.2
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 27 9.5
>06_02_0066 -
11081446-11081544,11081639-11081846,11083122-11083257,
11083339-11083541,11083616-11083765,11083848-11083964,
11084623-11085119
Length = 469
Score = 72.9 bits (171), Expect = 1e-13
Identities = 33/119 (27%), Positives = 61/119 (51%)
Frame = +1
Query: 181 TTVVIGNAYYQKKQFYPSIVYLTNSNPSMAVMYLQAFILVLLVGKMLRKIFFGQLRPAEF 360
T + A+ ++QFYP++VYL+ S ++ + + + ++++++F G LR AE
Sbjct: 3 TATAVYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQLVKRLFLGTLREAEV 62
Query: 361 EHLIERSWYAXTETCLAFTVFRDDFNPKFIXXXXXXXXXXXXXXXXEDRVDYMERSPVI 537
E L E++W E A T+FR DF+ F+ + RV+Y+E +P +
Sbjct: 63 ERLNEQAWREVVEILFAVTIFRQDFSVSFLAMVAALLLVKALHWLAQKRVEYIETTPSV 121
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +3
Query: 153 VSDGDQSRANHCGYRQCILPKETVLPFDSLFNKFKSKHGSDVFASVYFSFIGGKNAKE 326
VS Q+ + H +P + +PF+ +F+K + K + + SF+ G N+ E
Sbjct: 362 VSKNPQTPSKHSEATVKRIPLDIKVPFEKVFSKEEPKSRTSMLPESIMSFVSGWNSAE 419
>07_01_0353 +
2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 229 PSIVYL-TNSNPSMAVMYLQAFILVLLVGKMLRKIFFGQLRPAEFEHLIERSWYAXTETC 405
PS+ +L NP + + +L+A +LLVG L+K L P E E + + + A T C
Sbjct: 360 PSLEHLRVEDNPLLEMPHLEA-ASILLVGPTLKKFNDRDLNPGEAE--VAKQYPAHTAIC 416
Query: 406 L 408
+
Sbjct: 417 I 417
>11_01_0696 +
5735466-5735550,5735897-5735935,5737292-5737345,
5737374-5737549,5738030-5738233
Length = 185
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 153 VSDGDQSRANHCGYRQCILPKETVLPFDSLFNKFK-SKHGSDVFAS 287
V++G + A H GY Q PK LP + K S H S+V AS
Sbjct: 123 VAEGAVAHACHVGYSQARKPKRGGLPLPVENSSLKNSSHPSEVSAS 168
>05_05_0138 +
22644263-22644460,22644617-22644711,22645786-22645949,
22646725-22646970,22647600-22647944,22648516-22648586,
22648676-22648794,22650508-22650637,22650806-22650857,
22650974-22651136,22651244-22651418,22651772-22651942,
22652275-22652388,22652559-22652609
Length = 697
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 246 NKFKSKHGSDVFASVYFSF 302
+KFK +HG+DVF + SF
Sbjct: 205 SKFKEEHGADVFRQILHSF 223
>01_05_0256 - 19994072-19995268
Length = 398
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 200 LPITTVVSARLITVANTAFILIVFRSSFEMISSCASLIKFLCTPKY 63
LP+T T N +F + F +++ I C +L KF+ P Y
Sbjct: 258 LPVTFGTRENFRT-ENISFEVADFETAYHAILGCPALAKFMAVPHY 302
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 349 PAEFEHLIERSWYAXTETCLAFTVFRD 429
P+ E L+E W + ET + VFRD
Sbjct: 1659 PSNVEALVEYGWSSWLETSVKLDVFRD 1685
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,569,418
Number of Sequences: 37544
Number of extensions: 196350
Number of successful extensions: 390
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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