Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3b18
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0382 + 23649597-23649645,23649675-23649735,23650784-236509... 33 0.20
05_04_0352 + 20533846-20534038,20534117-20534391,20535134-20535634 31 0.62
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 31 1.1
02_04_0347 + 22193708-22193720,22194317-22194390,22195388-221961... 31 1.1
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 30 1.9
09_04_0549 + 18478475-18478664,18479381-18480648 29 2.5
09_04_0547 + 18467016-18467205,18467922-18469189 29 2.5
11_01_0260 - 1985258-1985794,1986874-1986990 29 3.3
08_02_0307 - 15612761-15612856,15613879-15613950,15614325-15615290 29 3.3
08_01_0399 + 3524723-3525272,3525468-3525544,3526816-3526861,352... 29 3.3
07_01_0084 + 657846-658538,660652-661920 29 4.4
09_06_0019 + 20258844-20258988,20259870-20259974,20261027-202610... 28 5.8
03_03_0020 + 13803567-13804610 28 5.8
08_01_0874 + 8575718-8576422,8576603-8576662,8576799-8576945,857... 28 7.6
02_04_0521 - 23631951-23633810 28 7.6
>03_05_0382 +
23649597-23649645,23649675-23649735,23650784-23650937,
23651019-23651149,23651239-23651315,23651439-23651477,
23651976-23652067,23652140-23652277,23652385-23652549
Length = 301
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 346 IGSGNYDTNYNMFVPGTIFRIVFEIKDT 429
IGS NYDT+Y + VP RI+F++ T
Sbjct: 237 IGSSNYDTSYKIRVPSWTDRILFKVDHT 264
>05_04_0352 + 20533846-20534038,20534117-20534391,20535134-20535634
Length = 322
Score = 31.5 bits (68), Expect = 0.62
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = -3
Query: 651 FHVTDHQWRSRGLGGEGARCSGLITAHRFVREIKITMRDPLHVRPGHNVFGHVEWYLREE 472
FH TD + L RC+GL A + E+ + DP H+ P ++G EWY
Sbjct: 24 FHPTDEELVMHYLC---RRCAGLPIAVPIIAEVDLYKFDPWHL-PRMALYGEKEWYFFSP 79
Query: 471 VRMKLP 454
K P
Sbjct: 80 RDRKYP 85
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 111 GRLRGY*--T*NAGFHRQHTGITKSWRQNRDRWQNQGECKKDVREPLRSRRRGAEGCGSP 284
GR RGY + + + ++SW ++R R ++ + R P RSR R + P
Sbjct: 1223 GRSRGYDRRSGSRSLSSRSRSRSRSWSRSRSRSRSWSRSRSRSRSPSRSRSRSYDQGAGP 1282
Query: 285 LRREVP 302
RR P
Sbjct: 1283 ARRPRP 1288
>02_04_0347 +
22193708-22193720,22194317-22194390,22195388-22196132,
22196203-22196417,22196505-22196786,22196870-22196998,
22197088-22197267,22197538-22197645,22197888-22198094
Length = 650
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 148 FTANIPGLLKVGDKIEIGGKIKENARKMSVNLCAQE--GEEPRDVVLHFDVRFHRDNI 315
FT +IP L VG + I G + ++L E G + +VLH+DVR D +
Sbjct: 187 FTIDIPCGLIVGSSVTIIGTPGSLSGNFRIDLVGTELPGGSGKPIVLHYDVRLTSDEL 244
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 300 PPGQHHIAVQEERHLDRKRKLRHQLQH 380
PP QH Q+++HLD + L+HQ QH
Sbjct: 145 PPPQHQ---QQQQHLDAMQDLQHQHQH 168
>09_04_0549 + 18478475-18478664,18479381-18480648
Length = 485
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 316 ISLSRKNGIWIGSGNYDTNYNMFVPGTIFRIVFEIKDTDVITIYCQ 453
+SL + GI +G+GNY + + P + ++F+ +D+ + C+
Sbjct: 134 VSLPAQRGISLGTGNYVVSVGLGTPAKQYAVIFD-TGSDLSWVQCK 178
>09_04_0547 + 18467016-18467205,18467922-18469189
Length = 485
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 316 ISLSRKNGIWIGSGNYDTNYNMFVPGTIFRIVFEIKDTDVITIYCQ 453
+SL + GI +G+GNY + + P + ++F+ +D+ + C+
Sbjct: 134 VSLPAQRGISLGTGNYVVSVGLGTPAKQYAVIFD-TGSDLSWVQCK 178
>11_01_0260 - 1985258-1985794,1986874-1986990
Length = 217
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 165 GITKSWRQNRDRWQNQGECKKDVREPLRSRRRGAEGCG 278
G+ K RQN++R + +G C+ ++ P+ + CG
Sbjct: 153 GLWKVGRQNKERGRGRGRCRGSLQPPVHVVGQQQSSCG 190
>08_02_0307 - 15612761-15612856,15613879-15613950,15614325-15615290
Length = 377
Score = 29.1 bits (62), Expect = 3.3
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Frame = -3
Query: 651 FHVTDHQWRSRGLGGEGARCSGLITAHRFVREIKITMRDPLHVRPGHNVF-GHVEWYLRE 475
F H WRS + C + RF + + + + PGH G V ++
Sbjct: 50 FRAACHHWRSC----TASPCGRGVVVPRFHPRRWMMLPEGNGLYPGHGKLRGFVRFFNLS 105
Query: 474 E---VRMKLPLAVYRDDVRVLDFEDYPKYRARNKHVVV 370
VR++LP+A RDD R+LD D RN+ V
Sbjct: 106 TGAFVRLRLPIA--RDDHRILDSVDGILLLQRNRDTAV 141
>08_01_0399 +
3524723-3525272,3525468-3525544,3526816-3526861,
3527121-3527235,3528252-3528306,3528432-3528557
Length = 322
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -3
Query: 630 WRSRGLGGEGARCSGLITAHRFVREIKITMRDPLHVRPGHNV 505
WR G GG GAR G++ A R R ++ LH R H V
Sbjct: 137 WRRGGCGGGGAR--GVLPAKRAPRAPRMRWTSTLHARFVHAV 176
>07_01_0084 + 657846-658538,660652-661920
Length = 653
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 387 SWHDISDSLRNQGHGRHHDILPGEVSFELPPEDTTQHGQIHCGLGGRGEDLALLF 551
S+H I HGRH GEV+F+ P ++ Q+H +++ ++F
Sbjct: 110 SYHHIDHDGNPLPHGRHRVAASGEVAFDSP----SRPDQVHLSFADGVDEMRVMF 160
>09_06_0019 +
20258844-20258988,20259870-20259974,20261027-20261097,
20261658-20261714,20262661-20262849,20263096-20263119
Length = 196
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 162 TGITKSWRQNRDRWQNQGECKKDVREPLRSRRRGA--EGCGSPLRREVPPGQHHIAVQEE 335
TG++K+ QN+ W+ + +K V L + G + G P RR PG A ++
Sbjct: 100 TGLSKALYQNKTVWKAI-DYEKLVNSWLYNELPGCTDDVAGRPSRRFRCPGDFAFATDQK 158
Query: 336 RHLDRK 353
+HL R+
Sbjct: 159 QHLPRE 164
>03_03_0020 + 13803567-13804610
Length = 347
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Frame = -3
Query: 639 DHQWRSRGLGGEG--ARCSGL 583
DH+W GLGG+ RC GL
Sbjct: 280 DHRWNQHGLGGDNVKGRCRGL 300
>08_01_0874 +
8575718-8576422,8576603-8576662,8576799-8576945,
8577390-8577527
Length = 349
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 202 GKIKENARKMSVNLCAQEGEEPRDVVLHFDVRFHRDNIISLSRKNGIWIGSGNYDTN 372
G++ +R+ + C++ G PR D+ H ++ SRK + GS +N
Sbjct: 76 GRMAYGSRRNAAGTCSETGNRPRRETAGQDLLDHLKERVNSSRKRSLSGGSSPSSSN 132
>02_04_0521 - 23631951-23633810
Length = 619
Score = 27.9 bits (59), Expect = 7.6
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +3
Query: 261 GAEGCGSPLRREVPPGQHHIAVQEERHLDRKRKLRHQLQHVCSWHDISDSLRNQGHGRHH 440
G G GSP +PP Q ++V + R+ +L + LQ + D+S RN+ G
Sbjct: 402 GGSGQGSPSEAVLPP-QLFVSVSTDM-AGRQLELGYDLQ-AATGIDLS---RNELRGEIP 455
Query: 441 DILPGEVSFE-LPPEDTTQHGQIHCGLGGRGEDLALLF*FREQNG 572
D L E L GQI G+GG G+ L F E +G
Sbjct: 456 DGLVAMKGLEYLNLSCNYLDGQIPSGIGGMGKLRTLDFSHNELSG 500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,090,799
Number of Sequences: 37544
Number of extensions: 497516
Number of successful extensions: 1712
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -