Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b18
         (662 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    27   0.70 
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   3.7  
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    24   4.9  
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    24   4.9  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   6.5  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   6.5  
CR954257-5|CAJ14156.1|  227|Anopheles gambiae predicted protein ...    23   8.6  

>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 26.6 bits (56), Expect = 0.70
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +3

Query: 255 RRGAEGCGSPLRREVPPGQHHIAVQEERHLDRKRKLRHQLQHVC------SWHDISDSLR 416
           RRG     S ++R V  G+   + +   H D KR L      +C      SW  I+D+LR
Sbjct: 545 RRG-RSTFSAIQRVVDAGRRAKSFRRTNHRD-KRCLMVVALDICNAFNTASWQSIADALR 602

Query: 417 NQG 425
           N+G
Sbjct: 603 NKG 605


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
            protein.
          Length = 973

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -2

Query: 409  LSEISCQEQTCCSWCRNFRFRSKCRSSWTAI*CCPGGTSRRSGEPHPSAPRLLERKGSRT 230
            LS  S ++ +   W   +   +K R++   I      TSR+ GE +    + L   G   
Sbjct: 835  LSRSSAKQLSMRKWQSEWDCSTKGRTTHALIPNIAAWTSRKHGEVNFYMTQFLSDHGCFR 894

Query: 229  SFLH 218
            S+LH
Sbjct: 895  SYLH 898


>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
           phosphatase protein.
          Length = 1977

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = +1

Query: 574 SGDEAGAPGAFAPQSPRPPLVVG--DVKRC 657
           +G EAG P  F P  P  P      DV RC
Sbjct: 863 AGSEAGHPYRFQPIVPELPTTTTTMDVSRC 892


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
           phosphatase protein.
          Length = 1978

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = +1

Query: 574 SGDEAGAPGAFAPQSPRPPLVVG--DVKRC 657
           +G EAG P  F P  P  P      DV RC
Sbjct: 862 AGSEAGHPYRFQPIVPELPTTTTTMDVSRC 891


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 307 PGGTSRRSGEPHPSAPR 257
           PGG   R G P P  PR
Sbjct: 403 PGGGEGRPGAPGPKGPR 419


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = -3

Query: 660  WTSFHVTD-HQWRSRGLGGEGARCSGLITAHRFVRE 556
            W    + D H W SR  G      S ++T H + RE
Sbjct: 902  WAHRMIPDLHLWMSRRHGEVDFHLSQVLTGHGYFRE 937


>CR954257-5|CAJ14156.1|  227|Anopheles gambiae predicted protein
           protein.
          Length = 227

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 455 PWQYIVMTSVSLISKTIRNIVPGTN 381
           P +Y+ +   S+I K  RN+  G N
Sbjct: 108 PGEYVDLARPSMIVKCTRNVCTGRN 132


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 777,168
Number of Sequences: 2352
Number of extensions: 17574
Number of successful extensions: 38
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66068490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)