Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b16
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|...    27   2.6  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    27   2.6  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    27   2.6  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   4.5  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   4.5  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   6.0  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    26   6.0  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    25   7.9  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    25   7.9  

>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 169 CGRTTNDFVSDGYVPAATLPFRIRGGGSHLALAGVHPLRS 50
           CG T+ D  +    P   L F+  G   + A  G H LR+
Sbjct: 49  CGLTSEDLEAGELPPVDVLTFKKSGKPYYFAFGGCHRLRA 88


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 557 DYTVNPPSKFALTVAGWGRYLQFDNGTVRSSKIKL 661
           +Y   PP +FAL  +G+ R L  D G V ++K+ L
Sbjct: 136 EYFSQPPFRFALFFSGYFRPLLMD-GAVHATKLDL 169


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 10  CYCATVDGSDHDPQTEAGARLP 75
           CY A  D  DH+P+TE  +  P
Sbjct: 138 CYLAYPDSRDHEPRTEGESSSP 159


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 28/106 (26%), Positives = 43/106 (40%)
 Frame = -1

Query: 381 DTDTQSRPGFVVLYSPRRTVFGVPTSKIAPFTQ*PAVSTYFPLMSAPPQSSIVLSSLTYS 202
           DTD+ S     V+ S   +V  V  S I       + S   P  ++   S+   +S T +
Sbjct: 198 DTDSASATISSVVDSATSSVSTVIPSSIISAAPPDSASESTPASTSYASST---TSATST 254

Query: 201 MTTSQGYESMDAGAPPTILSPTAMSRPQHFPSGLGGVAVISLWQAC 64
            TTS    S D G      + +  S    F + +GG A   +W +C
Sbjct: 255 STTSGSSGSSDWGRSSFYEADSGTSDNIVFLNNMGGSAGSGVWSSC 300


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 582 LLGGFTV*SVLGK-HIGLMKSVKGAMLCSLINPMSC 478
           LLGGF    ++G    GL   V   ++CS+I+  SC
Sbjct: 518 LLGGFLAWLIIGAIEGGLSMIVDALLICSIIDISSC 553


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 53  PKRVHACQSEMTATPPNPEGKCCG 124
           P+ + A Q  M  T   PEG+ CG
Sbjct: 497 PRSLQASQFGMLCTSDTPEGEACG 520


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = +2

Query: 482 DIGLIRLQSIAPFTDFIRPICLPSTDYTVNPPSKFALTVAGWGRYLQFDN 631
           D   + +  +    +F+ P CL    +T      F L VA W  +   D+
Sbjct: 43  DCVFLEISELREIIEFVGPDCLRGIYFTEPISQCFVLHVANWEEWSSIDS 92


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
 Frame = -3

Query: 430 LNAYLDQWVR----AIRAAR*YGHAITARVRRVVLAETHCFRR-------AYIQDRSFHA 284
           LN YL+ + R     + A +     +T  V      E+  FR        A + +++FH 
Sbjct: 108 LNEYLEYYARLLAEVVDATKFLPFQLTEEVLPTARIESELFREDILRVAMAKLHEKAFHR 167

Query: 283 MTGSEHVLPADERPATEQ 230
             G+E  LPA   P+  +
Sbjct: 168 GIGNEVYLPASASPSISE 185


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 17  APQSTAVTTTPRPKRVHACQSEMTATPPNPE 109
           AP + + T TP PK       + TA PP  E
Sbjct: 151 APAAQSKTETPAPKVTSESTKKETAAPPPQE 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,877
Number of Sequences: 5004
Number of extensions: 68867
Number of successful extensions: 222
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)