Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b13
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38 |...   161   1e-40
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    29   0.91 
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    27   2.8  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   4.9  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   6.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   8.5  

>SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score =  161 bits (390), Expect = 1e-40
 Identities = 78/167 (46%), Positives = 114/167 (68%)
 Frame = +2

Query: 68  PQYLIEKIIRSRIYDSKYWKEECFALTAELVVDKAMELRYVGGVHGGFIYPTPFLCLVLK 247
           P +LI KI+R RI DS YWKE+CF L A  +VD+A+ L Y+GG +G    PT F+CL+ K
Sbjct: 21  PTFLIGKILRERIVDSIYWKEQCFGLNACSLVDRAVRLEYIGGQYGNQ-RPTEFICLLYK 79

Query: 248 MLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDCYKYLEPLYNDNRKLRRQNRD 427
           +LQI PEK+I+ +++   EFKY+RAL AFY+RLT   V+ ++ LEPL  D RKLR +  +
Sbjct: 80  LLQIAPEKEIIQQYLSIPEFKYLRALAAFYVRLTWDDVEVHQTLEPLLRDYRKLRIRT-N 138

Query: 428 GQYEIVHMDEFIDELLREERLCDIIMPRIQKRHILEQNNEIEPKISA 568
            +  + ++DE +D+LL  E +CDI +P ++ R  LE  + +EP  S+
Sbjct: 139 SEIRLTYLDEVVDDLLNAEVVCDISLPPLRSRLQLEDLDLLEPLSSS 185


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 385 WLQILVAVNRGTGEAHVKSAKCTYVFELFILYELNHN-IFFWLYLKHF 245
           W+ + V +   T +  +  +KC       I+Y +    +F W+Y++H+
Sbjct: 246 WIGLAVFITMDTSDIWLALSKCLNYVNTVIVYPIFVIFVFVWIYMRHY 293


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = +2

Query: 482 ERLCDIIMPRIQKRHILE 535
           E+LC+++M  +QK+HI++
Sbjct: 782 EKLCEVVMEVLQKQHIVQ 799


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 389 YNDNRKLRRQNRDGQYEIVHMDEFIDELLRE 481
           Y DNR+L  + +DG   I H +  +D  L++
Sbjct: 13  YLDNRELAFRAKDGDKNIFHTESQLDSSLKK 43


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 519 NVIFWSRITKSSPKFRLWMMI 581
           N++FWS+ + S+  F  W+++
Sbjct: 419 NMVFWSKSSSSTVPFSSWLLL 439


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 4   KNHNKNGESYRKGREINSGYKSSVFNRKNYQ 96
           K HN +   +R G ++N+  +  V  + NY+
Sbjct: 402 KEHNADARRFRSGSDVNNVDRKCVKKQMNYR 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,845
Number of Sequences: 5004
Number of extensions: 62674
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)