Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b13
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0018 - 391827-392254,392553-392608,393976-394005,394666-39...   263   9e-71
05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464...    43   2e-04
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464...    29   3.9  
12_01_0113 - 864380-865027,865419-866408,867128-867194,868377-86...    28   6.7  
07_03_1450 + 26620178-26620456,26622122-26622775                       28   8.9  

>09_01_0018 -
           391827-392254,392553-392608,393976-394005,394666-394736,
           394819-394948,397627-397717,397798-397919,398014-398303
          Length = 405

 Score =  263 bits (645), Expect = 9e-71
 Identities = 121/184 (65%), Positives = 147/184 (79%)
 Frame = +2

Query: 20  MANRTVKDAKSIRGTNPQYLIEKIIRSRIYDSKYWKEECFALTAELVVDKAMELRYVGGV 199
           MANRT   AKSI GTNPQ L+EKI+RS+IY S YWKE+CF LTAE +VDKAMEL + GG 
Sbjct: 1   MANRTDPLAKSIHGTNPQNLVEKIVRSKIYQSTYWKEQCFGLTAETLVDKAMELDHTGGT 60

Query: 200 HGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDCYKYL 379
           +GG   PTPFLCL LKMLQIQP+KDIVVEFIKNE++KYVR LGAFY+RLT T  D Y+YL
Sbjct: 61  YGGNRKPTPFLCLALKMLQIQPDKDIVVEFIKNEDYKYVRVLGAFYLRLTATVADVYQYL 120

Query: 380 EPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRIQKRHILEQNNEIEPK 559
           EPLYND RK+R +  DG++ + H+DEFID+LL ++  CD  +PRIQKR +LE +  +EP+
Sbjct: 121 EPLYNDYRKIRHKLSDGKFTLTHVDEFIDDLLTKDYSCDTALPRIQKRWVLETSGTLEPR 180

Query: 560 ISAL 571
            SAL
Sbjct: 181 RSAL 184


>05_01_0538 +
           4646772-4647059,4647462-4647542,4647819-4647890,
           4648458-4649321
          Length = 434

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 35/161 (21%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
 Frame = +2

Query: 77  LIEKIIRSRIYDSKYWKEECFALTAELVVDKAM-ELRYVGG-VHGGFIYPTPFLCLVLKM 250
           L+EK++   I  S Y+KE     T   V+D+   ++ +V   + G    P+   CL+ K 
Sbjct: 13  LMEKVLCMNIMSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKF 72

Query: 251 LQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDCYKYLEPLYNDNRKLRRQNRDG 430
             ++     +   +K+ +  Y+RA+G  Y+R        + + EP   D+ +      +G
Sbjct: 73  FTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYVADPKILWTWYEPYLKDDEEF-SPGSNG 131

Query: 431 QYEIVHMDEFIDELLREERLCDIIMPRIQKRHILEQNNEIE 553
           +  +  M  ++ +L+  +   D ++PR+    I +  + +E
Sbjct: 132 R--MTTMGVYVRDLILGQYYFDSLLPRVPLPVIRQVTSNLE 170


>02_05_0844 -
           32144417-32144764,32145588-32145686,32146218-32146410,
           32147049-32147107,32147189-32147263,32147557-32147670,
           32147776-32147895,32148204-32148216,32148421-32148512,
           32149078-32149164,32149254-32149328,32149630-32149680,
           32149852-32149947,32150135-32150221,32150312-32150368,
           32150475-32150600,32150709-32150949,32151028-32151114,
           32151260-32151637,32152847-32153187
          Length = 912

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 97  ISYLRLEVLEGRMFRFNCRAGSRQSDGIALC 189
           + YLR    EG  F F+C +G    DGI+ C
Sbjct: 232 VRYLRPHQREGVQFMFDCVSGLLNDDGISGC 262


>12_01_0113 -
           864380-865027,865419-866408,867128-867194,868377-868468
          Length = 598

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 338 MRLTGTSVDCYKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREE 484
           M +TG S      + P  ++   LRR+NR+ + EI  M   + EL RE+
Sbjct: 462 MMMTGGSGVASSCVSPQRDNYACLRRENRELKLEIARMRVRLTELEREQ 510


>07_03_1450 + 26620178-26620456,26622122-26622775
          Length = 310

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 374 YLEPLYNDNRKLRRQNRDGQYEIVHMDEFIDELL 475
           +L  L  DNR+LRR+N     E+ HM +  ++++
Sbjct: 185 FLAALSEDNRQLRRRNSLLLSELAHMKKLYNDII 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,073,211
Number of Sequences: 37544
Number of extensions: 382039
Number of successful extensions: 1109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)