Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3b13
(737 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74030-12|CAA98434.1| 320|Caenorhabditis elegans Hypothetical p... 271 3e-73
AC024744-2|AAK72068.1| 327|Caenorhabditis elegans Hypothetical ... 47 2e-05
Z79694-8|CAB01965.1| 872|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z72506-9|CAA96622.1| 872|Caenorhabditis elegans Hypothetical pr... 30 2.0
X08068-1|CAA30857.1| 882|Caenorhabditis elegans paramyosin prot... 30 2.0
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 29 2.6
AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical... 29 2.6
Z74039-2|CAA98501.1| 448|Caenorhabditis elegans Hypothetical pr... 28 6.0
U39647-7|AAP31441.1| 544|Caenorhabditis elegans Twik family of ... 28 7.9
U39647-5|AAM51531.1| 576|Caenorhabditis elegans Twik family of ... 28 7.9
U39647-4|AAM51532.1| 562|Caenorhabditis elegans Twik family of ... 28 7.9
AF083651-1|AAC32862.1| 562|Caenorhabditis elegans putative pota... 28 7.9
AF083648-1|AAC32859.1| 544|Caenorhabditis elegans putative pota... 28 7.9
AF083647-1|AAC32858.1| 576|Caenorhabditis elegans putative pota... 28 7.9
AF022982-8|AAB69934.1| 234|Caenorhabditis elegans Hypothetical ... 28 7.9
>Z74030-12|CAA98434.1| 320|Caenorhabditis elegans Hypothetical
protein D1054.14 protein.
Length = 320
Score = 271 bits (665), Expect = 3e-73
Identities = 122/173 (70%), Positives = 147/173 (84%)
Frame = +2
Query: 20 MANRTVKDAKSIRGTNPQYLIEKIIRSRIYDSKYWKEECFALTAELVVDKAMELRYVGGV 199
MANRT K AK+++GTNPQ+L+EKIIR RIYDS YWKE CFALTAELVVDK M+LRY+GG+
Sbjct: 1 MANRTEKAAKTVKGTNPQFLVEKIIRQRIYDSMYWKEHCFALTAELVVDKGMDLRYIGGI 60
Query: 200 HGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDCYKYL 379
+ G I PTPFLCL LKMLQIQP+KDIV+EFI+ EEFKY+RALGA Y+RLT S + YKYL
Sbjct: 61 YAGNIKPTPFLCLALKMLQIQPDKDIVLEFIQQEEFKYIRALGAMYLRLTFDSTEIYKYL 120
Query: 380 EPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRIQKRHILEQ 538
EPLYND RKLR N+ G++E ++MD+FID LLRE+R CDI +PR+QKR LE+
Sbjct: 121 EPLYNDFRKLRYMNKMGRFEAIYMDDFIDNLLREDRYCDIQLPRLQKRWALEE 173
>AC024744-2|AAK72068.1| 327|Caenorhabditis elegans Hypothetical
protein Y108G3AL.2 protein.
Length = 327
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/109 (22%), Positives = 55/109 (50%)
Frame = +2
Query: 188 VGGVHGGFIYPTPFLCLVLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYMRLTGTSVDC 367
V GV G + + + CL+ ++ ++ + ++ + + + Y+R LG Y+R T D
Sbjct: 124 VRGVGAGGVVSSAY-CLLYRLFNLKISRKQLISMLNSRQSVYIRGLGFMYIRYTQPPADL 182
Query: 368 YKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFIDELLREERLCDIIMPRI 514
+ +LEP +D+R++ R G +++ + + ++ + + PRI
Sbjct: 183 WYWLEPYLDDDREI--DPRSGGGDLMTFGQLVRTMINKLDWYGTLFPRI 229
>Z79694-8|CAB01965.1| 872|Caenorhabditis elegans Hypothetical
protein F07A5.7 protein.
Length = 872
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/96 (18%), Positives = 43/96 (44%)
Frame = +2
Query: 284 EFIKNEEFKYVRALGAFYMRLTGTSVDCYKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFI 463
+ ++ + + A+ + + +D +E L N K+ R+ + Q+E++ + I
Sbjct: 103 KLLEESQLESEDAMNVLRKKHQDSCLDYQDQIEQLQKKNAKIDRERQRVQHEVIELTATI 162
Query: 464 DELLREERLCDIIMPRIQKRHILEQNNEIEPKISAL 571
D+L +++ + R + Q NE+ K+ L
Sbjct: 163 DQLQKDKHTAEKAAERFE-----AQANELANKVEDL 193
>Z72506-9|CAA96622.1| 872|Caenorhabditis elegans Hypothetical
protein F07A5.7 protein.
Length = 872
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/96 (18%), Positives = 43/96 (44%)
Frame = +2
Query: 284 EFIKNEEFKYVRALGAFYMRLTGTSVDCYKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFI 463
+ ++ + + A+ + + +D +E L N K+ R+ + Q+E++ + I
Sbjct: 103 KLLEESQLESEDAMNVLRKKHQDSCLDYQDQIEQLQKKNAKIDRERQRVQHEVIELTATI 162
Query: 464 DELLREERLCDIIMPRIQKRHILEQNNEIEPKISAL 571
D+L +++ + R + Q NE+ K+ L
Sbjct: 163 DQLQKDKHTAEKAAERFE-----AQANELANKVEDL 193
>X08068-1|CAA30857.1| 882|Caenorhabditis elegans paramyosin
protein.
Length = 882
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/96 (18%), Positives = 43/96 (44%)
Frame = +2
Query: 284 EFIKNEEFKYVRALGAFYMRLTGTSVDCYKYLEPLYNDNRKLRRQNRDGQYEIVHMDEFI 463
+ ++ + + A+ + + +D +E L N K+ R+ + Q+E++ + I
Sbjct: 119 KLLEESQLESEDAMNVLRKKHQDSCLDYQDQIEQLQKKNAKIDRERQRVQHEVIELTATI 178
Query: 464 DELLREERLCDIIMPRIQKRHILEQNNEIEPKISAL 571
D+L +++ + R + Q NE+ K+ L
Sbjct: 179 DQLQKDKHTAEKAAERFE-----AQANELANKVEDL 209
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 392 NDNRKLRRQNRDGQYEIVHMDE 457
N ++K+RRQN + + EIV++DE
Sbjct: 94 NRSKKMRRQNEEEEVEIVYVDE 115
>AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical
protein Y18H1A.9 protein.
Length = 488
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 318 RTYLNSSFFMNSTTISFSGCI*SIFNTKHKNGVG 217
RTY N + ST +S + + S++NT++K G G
Sbjct: 342 RTYSNDLNDLRSTALSAAQALNSVYNTQYKVGTG 375
>Z74039-2|CAA98501.1| 448|Caenorhabditis elegans Hypothetical
protein K03B8.2 protein.
Length = 448
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 25 ESYRKGREINSGYKSSVFNRKNYQISYL 108
ESY KG +N GY +S+ NY ++YL
Sbjct: 315 ESYWKGYWVNFGYSTSI-QTTNYYLAYL 341
>U39647-7|AAP31441.1| 544|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform e protein.
Length = 544
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 210 KPPCTPPT*RNSIALSTTSSAVKAKHSSFQYFES 109
+PP PP+ RNS ALS + V++ +F Y E+
Sbjct: 68 RPPSKPPSNRNSAALS-RHNTVRSHQFAFAYDEN 100
>U39647-5|AAM51531.1| 576|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform c protein.
Length = 576
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 210 KPPCTPPT*RNSIALSTTSSAVKAKHSSFQYFES 109
+PP PP+ RNS ALS + V++ +F Y E+
Sbjct: 68 RPPSKPPSNRNSAALS-RHNTVRSHQFAFAYDEN 100
>U39647-4|AAM51532.1| 562|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform d protein.
Length = 562
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 210 KPPCTPPT*RNSIALSTTSSAVKAKHSSFQYFES 109
+PP PP+ RNS ALS + V++ +F Y E+
Sbjct: 68 RPPSKPPSNRNSAALS-RHNTVRSHQFAFAYDEN 100
>AF083651-1|AAC32862.1| 562|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-1 protein.
Length = 562
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 210 KPPCTPPT*RNSIALSTTSSAVKAKHSSFQYFES 109
+PP PP+ RNS ALS + V++ +F Y E+
Sbjct: 68 RPPSKPPSNRNSAALS-RHNTVRSHQFAFAYDEN 100
>AF083648-1|AAC32859.1| 544|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-3 protein.
Length = 544
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 210 KPPCTPPT*RNSIALSTTSSAVKAKHSSFQYFES 109
+PP PP+ RNS ALS + V++ +F Y E+
Sbjct: 68 RPPSKPPSNRNSAALS-RHNTVRSHQFAFAYDEN 100
>AF083647-1|AAC32858.1| 576|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-2 protein.
Length = 576
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 210 KPPCTPPT*RNSIALSTTSSAVKAKHSSFQYFES 109
+PP PP+ RNS ALS + V++ +F Y E+
Sbjct: 68 RPPSKPPSNRNSAALS-RHNTVRSHQFAFAYDEN 100
>AF022982-8|AAB69934.1| 234|Caenorhabditis elegans Hypothetical
protein T23B12.1 protein.
Length = 234
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 148 CRAGSRQSDGIALCRRRARRFHLPHTIFVFSIKNASNTARKRYC 279
C S + + CRR +H+ +I SI+ AS + K YC
Sbjct: 153 CHGVSLAGNQVLACRRCRDCYHMACSIPTVSIEEASEPSFKYYC 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,965,110
Number of Sequences: 27780
Number of extensions: 348932
Number of successful extensions: 1068
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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