Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b11
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    26   0.28 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.85 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   2.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   3.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   3.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.5  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   7.9  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   7.9  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 501 FNGFLNRPPHSQPTISSVTTRPQKPMYPSTRPPFFSGGYFGNNPYRPQPIQH 656
           F GF+ +      + S + T P  P Y  + PP +   ++  NPY  Q +Q+
Sbjct: 1   FKGFVRQVKQEADSTSPLLTPPHNPAY--SPPPSYCDPWY--NPYYYQYLQN 48


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 279 ASYNQYTGRTFGAFYDLLAPNYSNSNSPFNDLQ 377
           +S+N Y       +Y  + P+Y NS +  N +Q
Sbjct: 296 SSHNYYAQNYAPTYYGQMQPDYLNSQTTQNHMQ 328


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +3

Query: 519  RPPHSQPTISSVTTRPQKPMYP---STRPP 599
            R   ++PT +S TTRP    +P   +T PP
Sbjct: 1059 RTTTTRPTTTSTTTRPTTTNWPTQGTTIPP 1088



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 555  TTRPQKPMYPSTRPP 599
            T+  QKP  PS RPP
Sbjct: 1163 TSSWQKPTKPSYRPP 1177


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = +3

Query: 564 PQKPMYPSTRPPFFSGGYFGNNPYRPQPIQHPSGGPLNHVVGVSPAKPTRKP 719
           P +PM+ ++   +  G Y  N P  P P        L    G    K  RKP
Sbjct: 75  PFRPMHQNSYTGYHLGSYAANCP--PSPKDDEKCLSLERPSGGGKGKKMRKP 124


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 522 PPHSQPTISSVTTRPQKPMYPSTRP 596
           PP+S+P +S  + + +K M  +  P
Sbjct: 108 PPNSEPLVSPKSEKEEKDMETTLTP 132


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 522 PPHSQPTISSVTTRPQKP 575
           PPH QP I     + Q+P
Sbjct: 203 PPHQQPPIQQQPNQGQQP 220


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 522 PPHSQPTISSVTTRPQKP 575
           PPH QP I     + Q+P
Sbjct: 205 PPHQQPPIQQQPNQGQQP 222


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 639 PQPIQHPSGGPLNHVVGVSPAKPTRKPT 722
           P+    P G PLN     +P K  + PT
Sbjct: 826 PERKMEPPGVPLNSTPRSTPDKREKSPT 853


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 534 QPTISSVTTRPQKPMYPST 590
           QPT SS T +PQ    P +
Sbjct: 417 QPTESSTTQKPQTTKTPES 435


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -1

Query: 719 RFSSRLGWRNANH-MIQGPTR 660
           +FSS +GW  A H   Q P R
Sbjct: 80  KFSSSVGWSPAGHEEAQSPHR 100


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,286
Number of Sequences: 336
Number of extensions: 3536
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)