Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b11
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    33   0.032
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.17 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.23 
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    28   1.2  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    27   2.1  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   3.7  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    27   3.7  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   6.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.6  

>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 33.5 bits (73), Expect = 0.032
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 483 HGHRNYFNGFLNRPPHSQPTISSVTTRPQKPMYPSTRPPFFSGGYFGNNPYRPQ 644
           HG R++ +G      H  P+     T P  P YP    P +S GY    P++PQ
Sbjct: 571 HGERHFDSG---NDWHGNPSTVPPPTNPYNPGYP-YMDPNYSSGYVSQPPWQPQ 620


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 22/68 (32%), Positives = 27/68 (39%)
 Frame = +3

Query: 519 RPPHSQPTISSVTTRPQKPMYPSTRPPFFSGGYFGNNPYRPQPIQHPSGGPLNHVVGVSP 698
           + P S P++ S       PM P   PP  S     N   RP     P+G   N V   SP
Sbjct: 182 KSPPSAPSLPSAVP----PMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPN-VTSESP 236

Query: 699 AKPTRKPT 722
             P R P+
Sbjct: 237 KFPNRGPS 244


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 570  KPMYPSTRPPFFSGGYFGNNPYRPQPIQHPSGGPLNHVVGVSPAKP 707
            +P  P + PP        ++P    P  HP   PL+  V  SPA P
Sbjct: 962  RPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAP 1007


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 501 FNGFLNRPPHSQPTISSVTTRPQKPMYPST 590
           FN ++NRP    P++S++   P     PST
Sbjct: 363 FNDYVNRPTSVMPSLSNMIVSPDLDSSPST 392


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 486 GHRNYFNGFLNRPPHSQPTISSVT 557
           G+  Y +GFL+ P H  PT +S +
Sbjct: 43  GYAVYHHGFLSSPSHKHPTTASAS 66


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 345 SNSNSPFNDLQENPQEDD--ANDCGEIEDYDEND 440
           S S     D+ E  +EDD   ND G+ ED +END
Sbjct: 241 SESYERDEDVDEEEEEDDDENNDEGDDEDENEND 274


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 303 RTFGAFYDLLAPNYSNSNSP 362
           RTFG F D+L  N S+ N+P
Sbjct: 252 RTFGNFADILVINVSSPNTP 271


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
 Frame = +3

Query: 489 HRNYFNGFLNRPPHS--QPTISSVTTRPQKPMYPSTRPPFFSGGYFGNNPYRPQPIQH 656
           H  Y    +N PP     P            +YPS    ++   Y   N + P P  H
Sbjct: 103 HNGYAPKSMNPPPEQLDSPCYPHFDQDSSSVIYPSPPSTYYPNMYVSANTFIPMPYAH 160


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
 Frame = +3

Query: 522 PPHSQPTISSVTTRPQKPMYPSTRPPFFSGGYFGNNPYRPQPIQHPSGGPL--NHVVGVS 695
           PP S  T+SS    P +P+ P +  P  +     + P  P P    S   L  N      
Sbjct: 257 PPPSNGTVSSPPNSPPRPIAPVSMNPAINS---TSKPPLPPPSSRVSAAALAANKKRPPP 313

Query: 696 PAKPTRK 716
           P  P+R+
Sbjct: 314 PPPPSRR 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,201
Number of Sequences: 5004
Number of extensions: 60814
Number of successful extensions: 222
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)