Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3b10
(334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 0.99
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 27 0.99
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 1.3
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 25 2.3
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 25 3.0
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 24 5.3
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p... 24 5.3
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 24 7.0
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 24 7.0
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr... 24 7.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 23 9.2
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 0.99
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 165 SVESVEVEGALSFCCLTSNSANFLLNISVNCAMD 266
+ E E+E AL CC S + L V C++D
Sbjct: 111 AAEWEEIERALLSCCKRSKDPSILFPTDVPCSLD 144
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 26.6 bits (56), Expect = 0.99
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 200 FLLSYLKFCKFLVEYISQLCHGLL 271
FLLS+L C+ L+E+++ C L+
Sbjct: 75 FLLSHLSLCQNLIEFLTARCPRLV 98
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 1.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 103 KIAHSLHF*DAQIKAALSKNNKMFILCNNV 14
+I+H+L D +K + KNN +FI + +
Sbjct: 528 RISHTLELQDILVKLSTPKNNDVFIFSSKI 557
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 25.4 bits (53), Expect = 2.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 212 KTAETERSLHFNTLHTENVSAGRHRYAAGTEPWGLSE 102
+TA E+ +HFN + E + H + T LSE
Sbjct: 81 RTAHGEKKIHFNQFYQEYIRDKNHVHMNATRWHTLSE 117
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.0 bits (52), Expect = 3.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 242 IQQEICRI*GKTAETERSLHFNTLHTENVSAGR 144
+ E+CR+ T E L F+ L +S+GR
Sbjct: 763 VLNEVCRLRSDTPEVNEGLLFSFLAILEISSGR 795
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 24.2 bits (50), Expect = 5.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 177 VEVEGALSFCCLTSNSANFLLNISVNCAMDC*IPSIV 287
VE+ ++ FCCL S++ ++N N + I SI+
Sbjct: 305 VELRHSIFFCCLRCLSSSRIVNSETNVMVPYMIYSIL 341
>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 392
Score = 24.2 bits (50), Expect = 5.3
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -1
Query: 76 DAQIKAALSKNNKMFILCNN 17
++Q+K+ALS NN+ +L +N
Sbjct: 194 ESQVKSALSWNNETILLIHN 213
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 58 PLLFERLKNVKSARSSLS 111
P+LF+R KN+ SA ++ S
Sbjct: 968 PVLFKRFKNLSSAENTTS 985
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 159 CVGGSPQIRSGYRTLG 112
CV + +IR+GYR LG
Sbjct: 43 CVDSNIKIRNGYRNLG 58
>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 114
Score = 23.8 bits (49), Expect = 7.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 286 TMEGIQQSMAQLTDIFNKKFAEFEVRQQ 203
T EGIQ +M L D + + AEF+ Q+
Sbjct: 78 TQEGIQTAMNGLLDQYKQLEAEFQKFQK 105
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 23.4 bits (48), Expect = 9.2
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 93 CAIFAQSPGFGTRCVSVATRRHIFSVESVEVEGALSFCCLTSNSA 227
C IF PG G + + T R S + VEV AL+F TS+ +
Sbjct: 2515 CVIFCGPPGSGKSMLMLGTLR---SRQDVEVI-ALNFSISTSSKS 2555
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,229,074
Number of Sequences: 5004
Number of extensions: 22199
Number of successful extensions: 66
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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