Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b10
         (334 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058770-1|AAL13999.1|  699|Drosophila melanogaster SD05126p pro...    29   1.9  
AE013599-1613|AAF58440.1|  700|Drosophila melanogaster CG17019-P...    29   1.9  
AF441759-1|AAM20923.1| 1276|Drosophila melanogaster ER-golgi esc...    28   3.4  
AE013599-134|AAF57291.3| 1276|Drosophila melanogaster CG33131-PA...    28   3.4  
AE014297-2740|AAF55726.2| 1491|Drosophila melanogaster CG31213-P...    27   4.4  
U35682-1|AAA79181.1|  163|Drosophila melanogaster signal recogni...    27   7.8  

>AY058770-1|AAL13999.1|  699|Drosophila melanogaster SD05126p
           protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 81  KCKECAIFAQSPGFGTRCVSVATRRHIFSVES--VEVEGAL 197
           +CK C++FAQ P   T  + +  +  IF ++S  +  EG L
Sbjct: 35  RCKRCSVFAQRPLSRTDLLKLKPKDLIFYLQSKHISTEGCL 75


>AE013599-1613|AAF58440.1|  700|Drosophila melanogaster CG17019-PA
           protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 81  KCKECAIFAQSPGFGTRCVSVATRRHIFSVES--VEVEGAL 197
           +CK C++FAQ P   T  + +  +  IF ++S  +  EG L
Sbjct: 35  RCKRCSVFAQRPLSRTDLLKLKPKDLIFYLQSKHISTEGCL 75


>AF441759-1|AAM20923.1| 1276|Drosophila melanogaster ER-golgi escort
           protein protein.
          Length = 1276

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 212 KTAETERSLHFNTLHTENVSAGRH 141
           +++E +R+L  N LH +NV  G H
Sbjct: 210 QSSENKRTLEHNCLHVDNVKRGTH 233


>AE013599-134|AAF57291.3| 1276|Drosophila melanogaster CG33131-PA
           protein.
          Length = 1276

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 212 KTAETERSLHFNTLHTENVSAGRH 141
           +++E +R+L  N LH +NV  G H
Sbjct: 210 QSSENKRTLEHNCLHVDNVKRGTH 233


>AE014297-2740|AAF55726.2| 1491|Drosophila melanogaster CG31213-PA
            protein.
          Length = 1491

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 157  TFSVWRVLKWRERSVSAVLPQILQISC 237
            TF +++ L WRE     VLP I ++ C
Sbjct: 997  TFGLFKCLAWREYCNREVLPPIEELDC 1023


>U35682-1|AAA79181.1|  163|Drosophila melanogaster signal
           recognition particle 19kDa protein protein.
          Length = 163

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 122 RYPLRICGDPPTHFQCGEC*SGGSAQFLLSYLKFCK 229
           R P   C D P++ +  +  S  + QFL+   K+C+
Sbjct: 45  RLPKENCVDNPSYIEIRDAVSVSNLQFLMENKKYCR 80


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,300,200
Number of Sequences: 53049
Number of extensions: 248333
Number of successful extensions: 573
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 735339255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)