Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b10
         (334 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    27   2.5  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    27   2.5  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      27   2.5  
Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical pr...    27   3.3  

>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 206  LSYLKFCKFLVEYISQLCHG 265
            +S +  CK+L+E + +LCHG
Sbjct: 1167 MSKVPMCKYLMEKVFKLCHG 1186


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 206  LSYLKFCKFLVEYISQLCHG 265
            +S +  CK+L+E + +LCHG
Sbjct: 1173 MSKVPMCKYLMEKVFKLCHG 1192


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 206  LSYLKFCKFLVEYISQLCHG 265
            +S +  CK+L+E + +LCHG
Sbjct: 1173 MSKVPMCKYLMEKVFKLCHG 1192


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 206  LSYLKFCKFLVEYISQLCHG 265
            +S +  CK+L+E + +LCHG
Sbjct: 1173 MSKVPMCKYLMEKVFKLCHG 1192


>Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical
           protein C54G4.4 protein.
          Length = 868

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 159 IFSVESVEVEGALSFCCLTSNSANFLLNISVNCAMD 266
           I SVE++E  GA+  C + S+        S++C+ D
Sbjct: 278 IVSVEAIETGGAVHQCIVDSSLFTINTTTSISCSYD 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,890,820
Number of Sequences: 27780
Number of extensions: 127820
Number of successful extensions: 333
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)