Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b08
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   158   9e-40
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.68 
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    26   6.3  
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.3  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.4  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.4  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  158 bits (383), Expect = 9e-40
 Identities = 73/165 (44%), Positives = 97/165 (58%)
 Frame = +2

Query: 185 PIALNKAAMRKYEDLEVPCDAILASYVWLDGTGINLRSKDRTFDFIPKDHKDLPIWYFDG 364
           P+    A + KY DL      ++A Y+W+DG   +LRSK  T D  P     L +W FDG
Sbjct: 8   PLLSKAAILNKYADLPQN-GKVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDG 65

Query: 365 SNTAQANPDNSDTFIFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKG 544
           S+T QA  +NSDT + P  +Y+DPFRRG++ILVLA  Y  +  P   NHR  C  + EK 
Sbjct: 66  SSTGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKH 125

Query: 545 EVEEPWFGFNQEFILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDK 679
             +E WFG  QE+ +     RP GWP GGFP P GP+YC +G+ +
Sbjct: 126 ADKETWFGIEQEYTMLDYYDRPFGWPKGGFPGPQGPFYCGVGTGR 170



 Score = 29.9 bits (64), Expect = 0.39
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 603 DVP*VGPLVDFPRLPGLITAP*GRIKIVARDLMEAFYRCCLY 728
           D P   P   FP   G      G  ++ ARD++EA Y+ CLY
Sbjct: 145 DRPFGWPKGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLY 186


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 416  EVIYHDPFRRGN-HILVLADTYQ--FNYQPTSSNHRKNCTI 529
            ++  H  F + N ++L LAD     FNY  T+S+HR N  I
Sbjct: 4570 QMFSHFTFEQSNTNVLALADASMKCFNYANTASHHRSNSDI 4610


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 421 DLPRPV*TWKPHISVSRHVPVQLSAHIVKSPEKL 522
           +LP+P+  + PH     +   +L A I  +P+KL
Sbjct: 20  NLPKPLPAYYPHPGSPLYADKELYARIANAPKKL 53


>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 286 NSSTIQPHVTCQNSIA-GHLQIFIFAH 209
           NSSTI+P  T  NS+    + IFIFA+
Sbjct: 90  NSSTIKPCFTWANSVLYNDILIFIFAN 116


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 58  QLQLQQYYNFRLKKHSAFRLQVAAIIRK 141
           + +LQ+YY  +L++  AF   V  IIRK
Sbjct: 77  EARLQEYYLEQLQERRAFENVVRTIIRK 104


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 230 PDLHICASPLCSKQSVWNSWSNSE-TFNNLF 141
           P  H C     S ++  N+WS+ E  FNN F
Sbjct: 276 PTHHSCVLEFTSHEAANNAWSSPEPIFNNRF 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,806
Number of Sequences: 5004
Number of extensions: 66372
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)