Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b04
         (149 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   1.5  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    20   2.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    20   2.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    20   2.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    20   2.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    20   2.6  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    18   7.9  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 1.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 47  KQNFFIYDCCSKFY 6
           KQ+F  ++ C K+Y
Sbjct: 479 KQDFMPHELCDKYY 492


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 2.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 47  KQNFFIYDCCSKFY 6
           K+N  +Y CC + Y
Sbjct: 185 KKNTIVYACCPEPY 198


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 2.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 47  KQNFFIYDCCSKFY 6
           K+N  +Y CC + Y
Sbjct: 185 KKNTIVYACCPEPY 198


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 2.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 47  KQNFFIYDCCSKFY 6
           K+N  +Y CC + Y
Sbjct: 185 KKNTIVYACCPEPY 198


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 2.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 47  KQNFFIYDCCSKFY 6
           K+N  +Y CC + Y
Sbjct: 185 KKNTIVYACCPEPY 198


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 2.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 47  KQNFFIYDCCSKFY 6
           K+N  +Y CC + Y
Sbjct: 185 KKNTIVYACCPEPY 198


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 18.2 bits (35), Expect = 7.9
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -1

Query: 32  IYDCCSK 12
           I++CCSK
Sbjct: 104 IFNCCSK 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6623
Number of Sequences: 336
Number of extensions: 39
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 30
effective length of database: 112,505
effective search space used:  2137595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)