Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3b03
(723 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000DB745D Cluster: PREDICTED: similar to Condensin ... 113 3e-24
UniRef50_A7SNA1 Cluster: Predicted protein; n=1; Nematostella ve... 93 6e-18
UniRef50_UPI00015B41BF Cluster: PREDICTED: similar to condensin;... 82 1e-14
UniRef50_UPI0000D55D50 Cluster: PREDICTED: similar to chromosome... 74 3e-12
UniRef50_Q17CA8 Cluster: Condensin; n=2; Culicidae|Rep: Condensi... 71 4e-11
UniRef50_UPI00015B4FCC Cluster: PREDICTED: similar to 13S conden... 67 4e-10
UniRef50_Q9VAJ1 Cluster: CG1911-PA; n=1; Drosophila melanogaster... 67 4e-10
UniRef50_Q4SND5 Cluster: Chromosome 8 SCAF14543, whole genome sh... 66 8e-10
UniRef50_A2RV05 Cluster: LOC571625 protein; n=9; Clupeocephala|R... 60 7e-08
UniRef50_Q15021 Cluster: Condensin complex subunit 1; n=32; Tetr... 59 1e-07
UniRef50_UPI0000E4A3F4 Cluster: PREDICTED: similar to 13S conden... 38 0.19
UniRef50_Q22MQ8 Cluster: ATPase, histidine kinase-, DNA gyrase B... 37 0.58
UniRef50_A1ZC66 Cluster: Tetratricopeptide repeat domain protein... 36 1.0
UniRef50_Q3S2Y1 Cluster: GtfB; n=2; Streptococcus agalactiae|Rep... 36 1.3
UniRef50_Q8VYE2 Cluster: Import inner membrane translocase subun... 35 2.3
UniRef50_Q0DRI7 Cluster: Os03g0380600 protein; n=7; Oryza sativa... 34 4.1
UniRef50_O87239 Cluster: Cytolysin B transport protein; n=1; Lac... 33 9.4
>UniRef50_UPI0000DB745D Cluster: PREDICTED: similar to Condensin
complex subunit 1 (Chromosome condensation-related
SMC-associated protein 1) (Chromosome-associated protein
D2) (hCAP-D2) (XCAP-D2 homolog); n=1; Apis
mellifera|Rep: PREDICTED: similar to Condensin complex
subunit 1 (Chromosome condensation-related
SMC-associated protein 1) (Chromosome-associated protein
D2) (hCAP-D2) (XCAP-D2 homolog) - Apis mellifera
Length = 1300
Score = 113 bits (273), Expect = 3e-24
Identities = 63/175 (36%), Positives = 101/175 (57%), Gaps = 1/175 (0%)
Frame = +1
Query: 202 DELLESHAGQYHVEDVVQPRLMLSKLQDGARAYNSVGVDYILEHFDTYFSIIVHGVKLEW 381
DELL++ GQY VE +V R++ L + A G+++IL+HFDT+FS+IVHG K+E
Sbjct: 15 DELLQNRNGQYFVEKIVSIRILPQALDEAKSALQMNGINFILDHFDTFFSLIVHGNKIEL 74
Query: 382 NVINKGFDHIIRAAKNLCSHLELILQE-QELDVDVRVKNLNITKMIMYLFTQIMKTKDTK 558
+I +GF I +A + L + LE I + +EL+ + R++ LNI KM+ YLF+ ++ D +
Sbjct: 75 PIIMRGFSRIHKAIEILVNDLENIFENGKELEEEDRLRFLNINKMLTYLFSWLLCHIDDE 134
Query: 559 LAADNSXXXXXXXXXXXXXXXXXXCGWTESDKQAAMLTLYLVTQQPLSRLWDPPL 723
++ D W ESD++ A+ +Y + Q PL +LW PP+
Sbjct: 135 ISKDRKKSAKSDIEEE----------W-ESDREKALEHIYRLLQLPLQKLWQPPI 178
>UniRef50_A7SNA1 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1367
Score = 93.1 bits (221), Expect = 6e-18
Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 1/183 (0%)
Frame = +1
Query: 178 EFAIPLQKDELLESHAGQYHVEDVVQPRLMLSKLQDGARAYNSVGVDYILEHFDTYFSII 357
+F IPL KD+LL S +G Y V++V+ R + KL D + G IL +FD +FS+I
Sbjct: 4 DFVIPLSKDDLLSSESGAYAVDEVISARSLPPKLADCYIDLRTDGPCSILRNFDVFFSLI 63
Query: 358 VHGVKLEWNVINKGFDHIIRAAKNLCSHLELILQEQELDVDVRVKNLNITKMIMYLFTQI 537
H ++ +V + + ++ A L S+++ I+++ + D + R +LN KMI YL TQ+
Sbjct: 64 RHFTDVDSSVREEAWQVLLNALSQLSSNIQPIIEQGDADTETRKTHLNTLKMICYLLTQM 123
Query: 538 MKTKDTKLAADNSXXXXXXXXXXXXXXXXXXCGWT-ESDKQAAMLTLYLVTQQPLSRLWD 714
++ + + S G+ E ++ + L + Q ++RLWD
Sbjct: 124 SESFEAEATKPTSQVTGKGRGKSAASKKKNSAGFDWEQQRERLVEMLGHLMQLDVNRLWD 183
Query: 715 PPL 723
PP+
Sbjct: 184 PPV 186
>UniRef50_UPI00015B41BF Cluster: PREDICTED: similar to condensin;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
condensin - Nasonia vitripennis
Length = 1359
Score = 82.2 bits (194), Expect = 1e-14
Identities = 53/188 (28%), Positives = 96/188 (51%), Gaps = 6/188 (3%)
Frame = +1
Query: 178 EFAIPLQKDELLESHAGQYHVEDVVQPRLMLSKLQDGARAYNSV--GVDYILEHFDTYFS 351
EF IPL KDEL+ +H +Y DVV +++ ++ ++ S V+ + E D + S
Sbjct: 5 EFVIPLDKDELVRTHFAEYGHRDVVPLQMINREINAISQQQISERGPVELVQEKLDLFLS 64
Query: 352 IIVHGVKLEWNVINKGFDHIIRAAKNLCSHLELILQEQ---ELDVDVRVKNLNITKMIMY 522
++VHG K+E ++ + F I+R +NL ++LE ++ E + D ++K L TK++ Y
Sbjct: 65 VVVHGNKVELPLLLRLFSRILRIVQNLIAYLENKAEQSQSLEFEQDEKIKLLATTKILAY 124
Query: 523 LFTQIMKTKDTKLA-ADNSXXXXXXXXXXXXXXXXXXCGWTESDKQAAMLTLYLVTQQPL 699
+ + ++ + ++A N+ W E+ ++ AM TL+ Q PL
Sbjct: 125 VLSSMLCQIEDQIADTSNNGIGNVGKRKKVTQKSDIEEEW-EAQREKAMETLHRWLQLPL 183
Query: 700 SRLWDPPL 723
LW PP+
Sbjct: 184 KYLWSPPI 191
>UniRef50_UPI0000D55D50 Cluster: PREDICTED: similar to chromosome
condensation-related SMC-associated protein 1; n=1;
Tribolium castaneum|Rep: PREDICTED: similar to
chromosome condensation-related SMC-associated protein 1
- Tribolium castaneum
Length = 1293
Score = 74.1 bits (174), Expect = 3e-12
Identities = 39/121 (32%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Frame = +1
Query: 181 FAIPLQKDELLESHAGQYHVEDVVQPRLMLSKLQDGARAYNSVGVDYILEHFDTYFSIIV 360
F+IP + +LL +Y V++VV +L KL++ G +IL++FDTY+SI+
Sbjct: 6 FSIPTNRADLLNESERKYTVKNVVVSSEILKKLEEARTGLLEEGPYFILDNFDTYYSILH 65
Query: 361 HGVKLEWNVINKGFDHIIRAAKNLCSHLELILQE-QELDVDVRVKNLNITKMIMYLFTQI 537
KL +VI KGF+ +++A K L + ++++ L + + K N+ KM+ Y+F Q
Sbjct: 66 QENKLSIDVIQKGFNSLLKAVKQLNDTILFLVEDPASLSEESKSKMANVLKMLTYIFVQF 125
Query: 538 M 540
+
Sbjct: 126 V 126
>UniRef50_Q17CA8 Cluster: Condensin; n=2; Culicidae|Rep: Condensin -
Aedes aegypti (Yellowfever mosquito)
Length = 1442
Score = 70.5 bits (165), Expect = 4e-11
Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 5/188 (2%)
Frame = +1
Query: 175 FEFAIPLQKDELLESHAGQYHVEDVVQPRLMLSKLQDGARAYNS-VGVDYILEHFDTYFS 351
++F IP ELL S Y V V+ R + L++ + N GV +HFDT++S
Sbjct: 3 WQFVIPRVNTELLNSDKNNYCVGRVLDSREIPEALKNARGSMNDPFGV---FDHFDTFYS 59
Query: 352 IIVHGVKLEWNVINKGFDHIIRAAKNLCSHLELILQEQELDVDVRVKNLNITKMIMYLFT 531
+I +G +L + + +D + A L L +L + +L + R+ LN KM+ YL
Sbjct: 60 VIDNGQQLSGTNLLRAYDLLFIAVDRLGKKLAEVLGKSDLPREERLPALNAVKMLTYLMG 119
Query: 532 QIMKTKDTKLAADNSXXXXXXXXXXXXXXXXXX----CGWTESDKQAAMLTLYLVTQQPL 699
++K D + A W +S + ++ LY + Q PL
Sbjct: 120 GLVKVIDAHVNAAKEGSGLLKKGGAKKNKDKDEELEALDW-DSKRNRCVVQLYNLFQLPL 178
Query: 700 SRLWDPPL 723
RLWDPP+
Sbjct: 179 ERLWDPPV 186
>UniRef50_UPI00015B4FCC Cluster: PREDICTED: similar to 13S condensin
XCAP-D2 subunit; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to 13S condensin XCAP-D2 subunit -
Nasonia vitripennis
Length = 1474
Score = 67.3 bits (157), Expect = 4e-10
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 8/190 (4%)
Frame = +1
Query: 178 EFAIPLQKDELLESHAGQYHVEDVVQPRLMLSK---LQDGARAYNSVGVDYILEHFDTYF 348
EF+IPL KDEL ++ GQY D V P ML++ + + + + + E D +
Sbjct: 5 EFSIPLDKDELTRTYFGQYGHRDPV-PLQMLNREINAMNMQQMSETEPSELVHEKLDLFL 63
Query: 349 SIIVHGVKLEWNVINKGFDHIIRAAKNLCSHLEL---ILQEQELDVDVRVKNLNITKMIM 519
S+IVHG K+E ++ + F I++ +NL +LE QE E++ + ++K L K +
Sbjct: 64 SVIVHGKKVELVLLLRFFGKILKILQNLIGYLEKRDEQTQELEVEQNEKMKLLFANKALA 123
Query: 520 YLFTQIMKTKDTKLAADNSXXXXXXXXXXXXXXXXXXC--GWTESDKQAAMLTLYLVTQQ 693
Y+ + + + +A +NS W E+ ++ M T+ Q
Sbjct: 124 YVVSTTLCLIEDLVAENNSSNGMVNAGRRKKPAQKSDTEEEW-ETQREKVMETVQRWLQL 182
Query: 694 PLSRLWDPPL 723
PL +W PP+
Sbjct: 183 PLKNVWSPPI 192
>UniRef50_Q9VAJ1 Cluster: CG1911-PA; n=1; Drosophila
melanogaster|Rep: CG1911-PA - Drosophila melanogaster
(Fruit fly)
Length = 1380
Score = 67.3 bits (157), Expect = 4e-10
Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 6/191 (3%)
Frame = +1
Query: 169 SH-FEFAIPLQKDELLESHAGQYHVEDVVQPRLMLSKLQDGARAYNSVGVDYILEHFDTY 345
SH F+F +PL +L+ S QY+V+++ + + +KLQ+ R + YI EHFD Y
Sbjct: 4 SHDFQFVLPLNASDLINSSGDQYYVKEIFGAQEIPAKLQECKRKVHLGDPFYIFEHFDLY 63
Query: 346 FSII-VHGVK-LEWNVINKGFDHIIRAAKNLCSHLELILQEQE-LDVDVRVKNLNITKMI 516
+SII G + + FD + + L L+ +L E + R LN+TKM
Sbjct: 64 YSIIEARGSDGASAQNLMRSFDLLYLTVEKLFQDLQPLLTASEPMSNQQRNSYLNLTKMT 123
Query: 517 MYLFTQIMK--TKDTKLAADNSXXXXXXXXXXXXXXXXXXCGWTESDKQAAMLTLYLVTQ 690
++L +K + A + W E + ++ L+ V Q
Sbjct: 124 LFLQVSTVKKINNSVQQAMRDQQLNVQKKRAKPSEGLEQFPNW-EVKRGKFLVQLFNVLQ 182
Query: 691 QPLSRLWDPPL 723
PL +LW PP+
Sbjct: 183 CPLEKLWSPPV 193
>UniRef50_Q4SND5 Cluster: Chromosome 8 SCAF14543, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 8 SCAF14543, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 1187
Score = 66.1 bits (154), Expect = 8e-10
Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 1/181 (0%)
Frame = +1
Query: 175 FEFAIPLQKDELLESHA-GQYHVEDVVQPRLMLSKLQDGARAYNSVGVDYILEHFDTYFS 351
++F +P+ +L+++ QY V+DVV P+ + S L A S G +LEHFDT +S
Sbjct: 1 WDFFVPVSVGDLVKTGGINQYVVQDVVPPKHLHSSLNKFKLALRSQGPLCVLEHFDTGYS 60
Query: 352 IIVHGVKLEWNVINKGFDHIIRAAKNLCSHLELILQEQELDVDVRVKNLNITKMIMYLFT 531
++ H +E V D +++ L L +L R LN KM +YL
Sbjct: 61 VLQHSHSVELGVKEDTLDLLVQVVSGLAGSLPALLISTTTSAAERKDQLNAVKMSVYLLC 120
Query: 532 QIMKTKDTKLAADNSXXXXXXXXXXXXXXXXXXCGWTESDKQAAMLTLYLVTQQPLSRLW 711
++ +T ++ N W +S+++ + L + Q + LW
Sbjct: 121 KLTETFESDSYRQNIITAPGKGGKKSKSSGEGLLQW-DSERERVLQALIQLLQLDIRSLW 179
Query: 712 D 714
+
Sbjct: 180 N 180
>UniRef50_A2RV05 Cluster: LOC571625 protein; n=9; Clupeocephala|Rep:
LOC571625 protein - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 1414
Score = 59.7 bits (138), Expect = 7e-08
Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 1/146 (0%)
Frame = +1
Query: 103 FKQLTLINVITYLLKSLR*QNMSHFEFAIPLQKDELLESHA-GQYHVEDVVQPRLMLSKL 279
F L+LI+ ++ + S R MS ++F +P+ D+L++S A QY V+DV+ + + S +
Sbjct: 16 FAVLSLISTLSAVTFS-RCAEMS-WDFMVPVCLDDLVKSGAVNQYVVQDVLSAKQLPSHI 73
Query: 280 QDGARAYNSVGVDYILEHFDTYFSIIVHGVKLEWNVINKGFDHIIRAAKNLCSHLELILQ 459
A S G ILEHFDT +S++ H ++ V + +I+ + L L +L
Sbjct: 74 NSFKAAMRSQGPLCILEHFDTAYSVLKHCRTVDVAVKEDILELLIQVVRGLSVSLPTLLM 133
Query: 460 EQELDVDVRVKNLNITKMIMYLFTQI 537
L R + LN KM ++L ++
Sbjct: 134 AGTLSAVDRKQQLNAVKMSVFLLCKL 159
>UniRef50_Q15021 Cluster: Condensin complex subunit 1; n=32;
Tetrapoda|Rep: Condensin complex subunit 1 - Homo
sapiens (Human)
Length = 1401
Score = 58.8 bits (136), Expect = 1e-07
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Frame = +1
Query: 175 FEFAIPLQKDELLESHA-GQYHVEDVVQPRLMLSKLQDGARAYNSVGVDYILEHFDTYFS 351
+EF +PL +ELL+S QY V++V+ + + +L+ A+ + G +L+HFDT +S
Sbjct: 6 YEFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHFDTIYS 65
Query: 352 IIVHGVKLEWNVINKGFDHIIRAAKNLCSHLELILQEQELDVDVRVKNLNITKMIMYLFT 531
I+ H ++ + + +I+ L IL + L R +LN KM Y
Sbjct: 66 ILHHFRSIDPGLKEDTLEFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMNCYALI 125
Query: 532 QIMKTKDTKLAADN 573
+++++ +T + N
Sbjct: 126 RLLESFETMASQTN 139
>UniRef50_UPI0000E4A3F4 Cluster: PREDICTED: similar to 13S condensin
XCAP-D2 subunit, partial; n=4; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to 13S condensin
XCAP-D2 subunit, partial - Strongylocentrotus purpuratus
Length = 819
Score = 38.3 bits (85), Expect = 0.19
Identities = 25/107 (23%), Positives = 46/107 (42%)
Frame = +1
Query: 403 DHIIRAAKNLCSHLELILQEQELDVDVRVKNLNITKMIMYLFTQIMKTKDTKLAADNSXX 582
D I+ A+N+ + L ++ + D R LN TKM Y+ Q+ + +T+ ++
Sbjct: 37 DKIVACARNVDA-LTKFIESPDNDPKFRHLLLNATKMTTYVLCQLTEAFETEACKPSTDT 95
Query: 583 XXXXXXXXXXXXXXXXCGWTESDKQAAMLTLYLVTQQPLSRLWDPPL 723
+S+K+ ++ L Q + RLWDPP+
Sbjct: 96 ATMKGRGRGKKTVKAGAWDWDSEKEKSLQCLIQTLQLDICRLWDPPV 142
>UniRef50_Q22MQ8 Cluster: ATPase, histidine kinase-, DNA gyrase B-,
and HSP90-like domain containing protein; n=1;
Tetrahymena thermophila SB210|Rep: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain containing
protein - Tetrahymena thermophila SB210
Length = 1668
Score = 36.7 bits (81), Expect = 0.58
Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Frame = +1
Query: 103 FKQLTLINVITYLLKSLR*QNMSHFEFA---IPLQKDELLESHAGQYHVEDVVQPRLMLS 273
+ QL +N YL+ ++ Q +F +A + ++ + + + +++D QP+ + S
Sbjct: 342 YHQLNELNNNPYLMNNVNNQEQKNFNYASQGLIGERQNQNNAQSSKRNLQDQFQPKQIES 401
Query: 274 KLQDGARAYNSVGVDYILEHFDTYFSIIVHGVKL 375
+ + YN+ G Y+ E + +F I+ G+ L
Sbjct: 402 EDTESMFNYNNGGSGYLKEFYGMFFQILSEGIIL 435
>UniRef50_A1ZC66 Cluster: Tetratricopeptide repeat domain protein;
n=1; Microscilla marina ATCC 23134|Rep:
Tetratricopeptide repeat domain protein - Microscilla
marina ATCC 23134
Length = 903
Score = 35.9 bits (79), Expect = 1.0
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +1
Query: 271 SKLQDGARAYNSVGVDYILE-HFDTYFSIIVHGVKLEWNVINKGFDHIIRAAKNLCSHLE 447
S+ D A YN++G++Y L+ ++T ++ +++ V+ KGF H + N +H+
Sbjct: 214 SEHADLAAPYNNIGINYYLKGEYETAQKYLLKAIEIRERVMGKGF-HTVAGFYNNLAHIY 272
Query: 448 LILQEQELDV 477
L +E +L +
Sbjct: 273 LDKKEYQLSL 282
>UniRef50_Q3S2Y1 Cluster: GtfB; n=2; Streptococcus agalactiae|Rep:
GtfB - Streptococcus agalactiae
Length = 442
Score = 35.5 bits (78), Expect = 1.3
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Frame = +1
Query: 205 ELLESHAGQYHVEDVVQP----RLMLSKLQDGARAYNSVG---VDYILEHFDTYFSIIVH 363
E+L H YH +LM + Y ++ +D + E D YF I H
Sbjct: 299 EVLVHHLSDYHFHIAAYTEMSFKLMSFSQEQNVTLYPNISRTDLDNLFEICDIYFDIN-H 357
Query: 364 GVKLEWNVINKGFD--HIIRAAKNLCSHLELILQEQELDVDV--RVKNL--NITKMIMYL 525
G +++ +VI + F+ H+I A N C + EL+L + ++ NL N++ IMYL
Sbjct: 358 GNEVD-DVIRRAFEYNHLIFAFDNTCHNRELVLDSNIISHTTCEQLINLMKNLSGSIMYL 416
Query: 526 FTQ 534
Q
Sbjct: 417 LEQ 419
>UniRef50_Q8VYE2 Cluster: Import inner membrane translocase subunit
TIM50, mitochondrial precursor; n=4; Magnoliophyta|Rep:
Import inner membrane translocase subunit TIM50,
mitochondrial precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 376
Score = 34.7 bits (76), Expect = 2.3
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +1
Query: 181 FAIPLQKDELLESHAGQYHVEDVV---QPRLMLS--KLQDGARAYNSVGVDYILEHFDTY 345
F PL + L + H + HV +V L+ + K + G R + GVD LEH +
Sbjct: 171 FTEPLSEKLLPDLHPAEQHVFTLVLDLNETLLYTDWKRERGWRTFKRPGVDAFLEHLGKF 230
Query: 346 FSIIVHGVKLEWNVI 390
+ I+V+ ++E V+
Sbjct: 231 YEIVVYSDQMEMYVL 245
>UniRef50_Q0DRI7 Cluster: Os03g0380600 protein; n=7; Oryza
sativa|Rep: Os03g0380600 protein - Oryza sativa subsp.
japonica (Rice)
Length = 1339
Score = 33.9 bits (74), Expect = 4.1
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 277 LQDGARAYNSVGVDYILEHFDTYFSIIVHGVKLEWNVINKGFD 405
+ + AR S+ YI++ T+FS+ +HG++ +N + +D
Sbjct: 653 MSNRARPEGSIAESYIMKECSTFFSMYLHGIETRFNRAERNYD 695
>UniRef50_O87239 Cluster: Cytolysin B transport protein; n=1;
Lactococcus lactis|Rep: Cytolysin B transport protein -
Lactococcus lactis
Length = 708
Score = 32.7 bits (71), Expect = 9.4
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +1
Query: 208 LLESHAGQYHVEDVVQPRLMLSKLQDGARAYNSVGVDYILEHFDTYFSIIVHGVKLEWNV 387
LL A QY ++++++ L K+ G A+ S+ + +I+ +F T SI + WN+
Sbjct: 176 LLLPLATQYSIDNLMKENFSLIKIISGLGAF-SIFM-FIVYYFRTMLSIKIM-YNFSWNL 232
Query: 388 INKGFDHII 414
IN+ F I+
Sbjct: 233 INRAFTRIL 241
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 663,632,266
Number of Sequences: 1657284
Number of extensions: 12291533
Number of successful extensions: 27328
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 26511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27319
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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