Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b03
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0799 - 32072656-32072841,32072846-32072950,32073726-320738...    31   0.93 
10_01_0133 + 1621574-1625779                                           29   2.8  

>01_06_0799 -
           32072656-32072841,32072846-32072950,32073726-32073839,
           32073935-32073996,32074709-32074745,32075091-32075179,
           32075331-32075604
          Length = 288

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +1

Query: 274 KLQDGARAYNSVGVDYILEHFDTYFSIIVHGVKLEWNVINKGFDHIIRAAKNLCSHLELI 453
           K + G R +   GVD  LEH   ++ I+V+  +L  +++ + F + +  ++   +  EL 
Sbjct: 192 KRERGWRTFKRPGVDAFLEHLGKFYEIVVYSDQL--SMVYQNFLNNLVVSEKYINPDELF 249

Query: 454 LQEQELD 474
           L  Q +D
Sbjct: 250 LHGQYVD 256


>10_01_0133 + 1621574-1625779
          Length = 1401

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +3

Query: 183  CYSLTKGR----VIRIPCRTISRRGCSTTATHVVEITRWSPCL 299
            C SL+ GR     I+IP + +  R C  T   + EI    PCL
Sbjct: 1113 CISLSSGRGESDAIQIPIKHLMLRNCYITGKELSEILACCPCL 1155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,345,496
Number of Sequences: 37544
Number of extensions: 311670
Number of successful extensions: 604
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)