Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b03
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48006-5|CAA88049.1|  251|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z69384-6|CAA93414.3|  499|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z48006-5|CAA88049.1|  251|Caenorhabditis elegans Hypothetical
           protein F19C6.5 protein.
          Length = 251

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
 Frame = +1

Query: 241 EDVVQPRLMLSKLQ-DGARAYNSVGVDYILEHFDTYFSIIVHGVKLEWNVINKGFDHIIR 417
           E++  P+  + +++ D   +Y     + +LE  +TY+++ V   +L   V+      +  
Sbjct: 20  ENMFNPQPDIPRIRNDSTHSYQQP--ESMLEKLNTYYTLAVVIAQLTIGVLGNSLTLVAD 77

Query: 418 AAKNLCSHLELILQEQELDVDVRVKNL---NITKMIMY-LFTQIMKTKDTKLA 564
           A +    HLEL   ++      R+  +    IT +I++ LF   + T   + A
Sbjct: 78  ATRIFADHLELFQYDRAATPGKRLTEIITVGITNVILFLLFVAFLLTASGRAA 130


>Z69384-6|CAA93414.3|  499|Caenorhabditis elegans Hypothetical
           protein T11G6.4 protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 576 GIISSQFGVFCFHYLGEEVHYHFSNI*IF 490
           G+  S   VFCF +L E+ H++ + + IF
Sbjct: 112 GMAMSAISVFCFGFLTEKYHFYSAPLYIF 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,747,922
Number of Sequences: 27780
Number of extensions: 309495
Number of successful extensions: 647
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)