Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b03
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          29   0.034
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      29   0.034
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          26   0.31 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      26   0.31 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          26   0.31 
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    23   2.9  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.9  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 29.5 bits (63), Expect = 0.034
 Identities = 21/83 (25%), Positives = 40/83 (48%)
 Frame = +1

Query: 250 VQPRLMLSKLQDGARAYNSVGVDYILEHFDTYFSIIVHGVKLEWNVINKGFDHIIRAAKN 429
           +QP+   S+LQ     + SV +D +  +FD   ++I + V +E N   KG  ++   A+ 
Sbjct: 437 LQPQYSQSELQMPGVKFESVNIDKLYTYFDKCDTLINNAVAVE-NF--KGGMYLRLKARR 493

Query: 430 LCSHLELILQEQELDVDVRVKNL 498
            C + E    +  ++ D   K +
Sbjct: 494 ACMNYERFTYKININSDKETKGM 516


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 29.5 bits (63), Expect = 0.034
 Identities = 21/83 (25%), Positives = 40/83 (48%)
 Frame = +1

Query: 250 VQPRLMLSKLQDGARAYNSVGVDYILEHFDTYFSIIVHGVKLEWNVINKGFDHIIRAAKN 429
           +QP+   S+LQ     + SV +D +  +FD   ++I + V +E N   KG  ++   A+ 
Sbjct: 437 LQPQYSQSELQMPGVKFESVNIDKLYTYFDKCDTLINNAVAVE-NF--KGGMYLRLKARR 493

Query: 430 LCSHLELILQEQELDVDVRVKNL 498
            C + E    +  ++ D   K +
Sbjct: 494 ACMNYERFTYKININSDKETKGM 516


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = +1

Query: 232 YHVEDVVQPRLMLSKLQDGARAYNSVGVDYILEHFDTYFSIIVHGVKLEWNVINKGFDHI 411
           YH      P+    +L     +  SV VD ++ +FD + S++ +GV ++ +   K  + +
Sbjct: 428 YHKYKENLPKYTTEELNFPGVSIESVTVDKLITYFDHFESMLNNGVSIQSHA--KAKNTM 485

Query: 412 IRAAKNLCSH 441
           I+A +   +H
Sbjct: 486 IKARQYRLNH 495


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = +1

Query: 232 YHVEDVVQPRLMLSKLQDGARAYNSVGVDYILEHFDTYFSIIVHGVKLEWNVINKGFDHI 411
           YH      P+    +L     +  SV VD ++ +FD + S++ +GV ++ +   K  + +
Sbjct: 428 YHKYKENLPKYTTEELNFPGVSIESVTVDKLITYFDHFESMLNNGVSIQSHA--KAKNTM 485

Query: 412 IRAAKNLCSH 441
           I+A +   +H
Sbjct: 486 IKARQYRLNH 495


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = +1

Query: 232 YHVEDVVQPRLMLSKLQDGARAYNSVGVDYILEHFDTYFSIIVHGVKLEWNVINKGFDHI 411
           YH      P+    +L     +  SV VD ++ +FD + S++ +GV ++ +   K  + +
Sbjct: 54  YHKYKENLPKYTTEELNFPGVSIESVTVDKLITYFDHFESMLNNGVSIQSHA--KAKNTM 111

Query: 412 IRAAKNLCSH 441
           I+A +   +H
Sbjct: 112 IKARQYRLNH 121


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 581 LVELSAANLVS-FVFIIWVKRYIIILVIFR 495
           ++ L+ + L S F F+I V  YI+ILV  R
Sbjct: 57  VIVLAFSGLFSVFSFLILVSSYIVILVNLR 86


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/57 (19%), Positives = 25/57 (43%)
 Frame = +1

Query: 292 RAYNSVGVDYILEHFDTYFSIIVHGVKLEWNVINKGFDHIIRAAKNLCSHLELILQE 462
           +++N +  +   ++ +TY  I  H VK     +   F+++    K L   +   + E
Sbjct: 156 KSHNDIYCEKYEKNGETYLRIKKHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINE 212


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 255 LYYILDVILSCMGF**LVLL 196
           L+Y +++I+ CMG   L +L
Sbjct: 245 LFYTVNIIIPCMGISFLTVL 264


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 255 LYYILDVILSCMGF**LVLL 196
           L+Y +++I+ CMG   L +L
Sbjct: 245 LFYTVNIIIPCMGISFLTVL 264


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/41 (21%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 602  VRRQQKKKNYVVGQNLTSKRQCSLCTW-LHNNHYQDCGTLH 721
            +R+++ ++  V+  + + +    + TW  H+N  + C T+H
Sbjct: 1651 IRQERTQQRNVISDSESGRLDTEMSTWGYHHNVNKHC-TIH 1690


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 560 WLLIIPLS*HWARKVRRQQKKKNY 631
           + + + +S H    VRR  ++KNY
Sbjct: 247 YAIFLYISWHQKELVRRDSRRKNY 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,256
Number of Sequences: 438
Number of extensions: 3922
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)