Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b02
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    28   1.2  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   4.7  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.1  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    26   6.1  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   8.1  

>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
 Frame = +2

Query: 272 WSNASPVLYSIRLSRNVYRSTVPSVFGRK----TGSCFAMASGRR-YKEAALRTNEPSFG 436
           W N    ++ +  SRNV      + +G K     G C   AS  R YKE  LR  +  F 
Sbjct: 114 WQNYEKEIFRVEESRNVEDEHSNATYGLKPMNCPGHCIVYASTERSYKELPLRFAD--FS 171

Query: 437 PRNLRVAGRSEVALCKIR 490
           P +   A  +   L ++R
Sbjct: 172 PLHRNEASGALSGLTRLR 189


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -2

Query: 280 ITPEIMVRNTPCTDVDSSSGIDICHTCFRLALTLNSVASKIFRIRPSSVHK 128
           + PE +  N+P T+ D S+   +  + ++ A +L S +   F  RPS +++
Sbjct: 50  VDPETLPSNSPETNDDVSNYDYMSISSYQRAHSLASTSRNDFNYRPSEINE 100


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 99  NTIASSYYQFL*QPNVFNEVFILFLYYMFMV 7
           N  AS +YQ   +P+     FIL  YY + +
Sbjct: 490 NEQASEFYQLEKEPDTVPSTFILHRYYTYRI 520


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/83 (21%), Positives = 31/83 (37%)
 Frame = -2

Query: 391 ATRSHGKTRAGLSSKNTGYSRTIYVAR*TYTVKHWTSITPEIMVRNTPCTDVDSSSGIDI 212
           A R +   R G   + TGY    +          W  +    ++ +  C D+    G+ +
Sbjct: 33  AKRQNASLRVGPELEVTGYGCEDHFLESDTYYHSWEMLCS--IIHDPDCQDILLDIGMPV 90

Query: 211 CHTCFRLALTLNSVASKIFRIRP 143
            H   R    + ++  KI  IRP
Sbjct: 91  MHKAMRHNCRILALNGKILLIRP 113


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 398  YSGDQKPWQNKSRSFF 351
            Y   +KPWQ K R FF
Sbjct: 1230 YDRREKPWQGKDRLFF 1245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,530
Number of Sequences: 5004
Number of extensions: 59703
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)