Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b01
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...   285   3e-78
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...   252   3e-68
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    28   1.2  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   4.8  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    26   6.4  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   6.4  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    26   6.4  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    25   8.5  

>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score =  285 bits (700), Expect = 3e-78
 Identities = 128/207 (61%), Positives = 155/207 (74%)
 Frame = +3

Query: 114 YIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEISL 293
           Y   E G+  T DY+V+ +  G PIS  HDIPL+A+  + ++NMVVE+PRWT AK+EI+ 
Sbjct: 4   YTTREVGALNTLDYQVYVEKNGTPISSWHDIPLYANAEKTILNMVVEIPRWTQAKLEITK 63

Query: 294 GEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTWENPNHVDPDTGARGDNDPVDV 473
              LNPIKQD KKG LRFV N FPH GYIWNYGA PQT+E+PN V P+T A+GD+DP+DV
Sbjct: 64  EATLNPIKQDTKKGKLRFVRNCFPHHGYIWNYGAFPQTYEDPNVVHPETKAKGDSDPLDV 123

Query: 474 IEIGERVASRGDVYPVKILGTLALIDEGETDWKLIAIDSRDPNAEKLNDVQDVETLFPGL 653
            EIGE     G V  VK+LG +AL+DEGETDWK+I ID  DP A KLND++DVE   PGL
Sbjct: 124 CEIGEARGYTGQVKQVKVLGVMALLDEGETDWKVIVIDVNDPLAPKLNDIEDVERHMPGL 183

Query: 654 LRATVEWFRLYKVPDGKPVNKFAFDGE 734
           +RAT EWFR+YK+PDGKP N FAF GE
Sbjct: 184 IRATNEWFRIYKIPDGKPENSFAFSGE 210


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score =  252 bits (618), Expect = 3e-68
 Identities = 115/215 (53%), Positives = 146/215 (67%)
 Frame = +3

Query: 87  ATLKTQVRMYIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRW 266
           A+L   +  +  +  G   TPD+RV+      PIS  HD+PL +DK     NMV E+PRW
Sbjct: 2   ASLAKNILQFRSKITGKLNTPDFRVYCYKNNKPISFFHDVPLTSDKDT--FNMVTEIPRW 59

Query: 267 TNAKMEISLGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTWENPNHVDPDTGA 446
           T AK EISL    +PIKQD+K G LR+V N FP+ G+IWNYGALPQTWE+PN +D  T  
Sbjct: 60  TQAKCEISLTSPFHPIKQDLKNGKLRYVANSFPYHGFIWNYGALPQTWEDPNVIDSRTKM 119

Query: 447 RGDNDPVDVIEIGERVASRGDVYPVKILGTLALIDEGETDWKLIAIDSRDPNAEKLNDVQ 626
           +GD DP+DV EIG  +   G +  VK+LG L LID+GETDWK++AID  DP A+ LND+ 
Sbjct: 120 KGDGDPLDVCEIGGSIGYIGQIKQVKVLGALGLIDQGETDWKILAIDINDPRAKLLNDIS 179

Query: 627 DVETLFPGLLRATVEWFRLYKVPDGKPVNKFAFDG 731
           DV+ L P LL  T +WF +YK+PDGKP N+F FDG
Sbjct: 180 DVQNLMPRLLPCTRDWFAIYKIPDGKPKNRFFFDG 214


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +3

Query: 9   PVCRSIARRLCAVKEPTRVTCSINSTATLKTQVRMYIVEERGSPYTPD 152
           P    +A R C   +  R  C I   +T K+   +YI  E   P T +
Sbjct: 59  PEWAELADRACETMKTLRHPCIIKYLSTYKSSTHLYIATETVRPVTTE 106


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 129 RGSPYTPDY--RVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEISLGEA 302
           RG P T +    V+ K+  GP  P     +     + ++++V+E  +WTNA   + +  +
Sbjct: 301 RGEPVTLENGKTVYPKEVIGPSIPGSSFFIIHCPNELVIDLVIENHKWTNAPKPVCVIHS 360

Query: 303 LNP 311
           + P
Sbjct: 361 VTP 363


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 690 VPDGKPVNKFAFDGE 734
           +PDGKP+NK A+  E
Sbjct: 505 IPDGKPLNKIAWQPE 519


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/70 (27%), Positives = 27/70 (38%)
 Frame = +3

Query: 432 PDTGARGDNDPVDVIEIGERVASRGDVYPVKILGTLALIDEGETDWKLIAIDSRDPNAEK 611
           P   A     P+    +     S    YP +I+ T  + +  E DW    + S  PN E 
Sbjct: 218 PSDSANSSVTPIAAPLVVNGKVSGNPPYPAEIIPTSNVPNREEKDW---TVTSNVPNKEP 274

Query: 612 LNDVQDVETL 641
              VQ + TL
Sbjct: 275 PISVQLLHTL 284


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 25/92 (27%), Positives = 42/92 (45%)
 Frame = -1

Query: 703 LPSGTL*SLNHSTVARRRPGNNVSTSCTSFNFSAFGSRESIAISFQSVSPSSMRASVPRI 524
           L +  +  +N S +      +N S S  S   +    R + A   QS+ P+S+ +S+   
Sbjct: 392 LSANQIFGMNQSVIGANSGSSNSSGS--SLKSAPVSPRTAAA---QSLLPNSVVSSI--- 443

Query: 523 FTG*TSPRLATRSPISMTSTGSLSPLAPVSGS 428
             G  S   +T SP  ++ + S+SP    SGS
Sbjct: 444 -NGMNSVNFSTISPPPLSRSASISPTLSGSGS 474


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 165 FKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEISLGEALNPIKQDVKK 332
           F+D+ G +  M +  L+  +  +++    +   WT  ++ + L  AL  IKQ VK+
Sbjct: 276 FRDDNGILIEMKE--LFTHQIPKMLRPYFKPNDWTPNRLLVVLEHALEWIKQTVKQ 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,409
Number of Sequences: 5004
Number of extensions: 58729
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)