Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a24
         (670 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    28   0.23 
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       28   0.31 
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    24   3.8  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 28.3 bits (60), Expect = 0.23
 Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
 Frame = +3

Query: 393  RRTAEETE--NRRVQKTKATVLRVTMDRILKTVINNKIDSMIEKVRDKFCQEFGECANTR 566
            ++T EE E  N++++  + T++     R  +T  + K+  +  K+ D       E  +  
Sbjct: 737  QQTKEEIEELNKKIETLQKTIVEA---RETQTQCSAKVKDLQAKIADGKGHRERELKSAE 793

Query: 567  TLSVESTVEQQIESSKNFDKHLNELETLIKQLKD 668
               ++ + ++  ES KN+ KH  + ETL  ++++
Sbjct: 794  E-DLKRSKKKSEESRKNWKKHEQDFETLKLEIEE 826


>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 0.31
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 519 VRDKFC-QEFGECANTRTLSVESTVEQ-QIESSKNFD 623
           VRD+ C QEF EC++   + + +TVE   I+    FD
Sbjct: 827 VRDRNCRQEFCECSHVLQIPLHATVEMVMIDEGFTFD 863


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 474 LKTVINNKIDSMIEKVRDKFCQEFGECANTRT 569
           L  + N  +   IEK    FC+ + +C NT T
Sbjct: 455 LDGIPNAAVKVAIEKYPGVFCRVYQDCLNTGT 486


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,041
Number of Sequences: 2352
Number of extensions: 14823
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66904800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)