Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a22
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...   109   5e-25
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    77   3e-15
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    30   0.34 
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    29   0.45 
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    27   1.8  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   3.2  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    27   3.2  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    26   5.5  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    26   5.5  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    26   5.5  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   5.5  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.3  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    25   7.3  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   9.7  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   9.7  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    25   9.7  

>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  109 bits (261), Expect = 5e-25
 Identities = 48/106 (45%), Positives = 66/106 (62%)
 Frame = +2

Query: 287 IIRFEMPYNIWCDGCNNHIGMGVRYNAEKKKIGMYYTTPVYQFRMKCHLCDNHFEIKTDP 466
           +IRFEMP+ +WC+ C N I  G R+NA KK+IG YYTT ++ F +KCHLC N  ++ TDP
Sbjct: 22  VIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVHTDP 81

Query: 467 GNLDYVIVSGARRQENRWDPTENGQIVPETKEAQKKLFDDAMFRLE 604
            N +Y++ SG RR+    D  E     P   E  +K+  DA+  LE
Sbjct: 82  KNTEYIVASGGRRKIEPQDINER----PAKAENDEKVPSDAIEALE 123


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 3/157 (1%)
 Frame = +2

Query: 158 MGERKGQNLYYPPDYDPKVGGLNKFQGTHALRERARKLHMGILIIRFEMPYNIWCDGCNN 337
           M ERK  N Y PPDYDP +    K       +++ +  + G L +R   P+++ C  C  
Sbjct: 1   MSERKVLNKYIPPDYDPSIRPPKK-------KKKFQGPNGGKLTVRLMTPFSMRCHTCGE 53

Query: 338 HIGMGVRYNAEKKKIG-MYYTTPVYQFRMKCHLCDNHFEIKTDPGNLDYVIVSGARRQEN 514
           +I  G ++NA K+K G  Y++  + +F ++C  C       TDP + DY   SGA R   
Sbjct: 54  YIYKGKKFNARKEKTGEKYFSIDILRFYIRCTRCAAEITFITDPKHADYAAESGASRNYE 113

Query: 515 RWDPTENGQIVPETKEAQKKLF--DDAMFRLEHKKGD 619
            W   +  Q   E + A++     +D M +LE K  D
Sbjct: 114 PWH-EKRLQEYEENELAERNDIPEEDEMEKLEQKTLD 149


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +2

Query: 125 INKRRNSNKSTMGERKGQNLYYPPDYDPKVGGLNKFQGTH-ALRERARKLHMGILIIRFE 301
           I K  N+N +     KGQ    P D  PK   + K +GT        R+L MGI    FE
Sbjct: 6   IQKLENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFE 65

Query: 302 MP 307
            P
Sbjct: 66  RP 67


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 375 FFSALYLTPMPI--WLLHPSHQMLYGISKRMIRIPMWSFLARSLKAWVP 235
           F + LY  P  I  WL+HP+H +L  +   ++    W ++ + L A +P
Sbjct: 636 FLTKLYTFPFTIITWLMHPTHLLLVVMFSMLVL--QWWYMQQILHAELP 682


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = -1

Query: 420 ILNWYTGVV*YIPIFFFSALYLTPMPIWLLHPSHQMLYGISKRMIRIPMWSFLARSLKAW 241
           IL    G+  +I +FF  A   + +P+W    +  ++  +  +   +  WS+L  S+ A+
Sbjct: 407 ILGMVVGICFFISLFF--APIFSSIPVWATGSTLVLVGSMMMKSTTLINWSYLGDSIPAF 464

Query: 240 V 238
           +
Sbjct: 465 I 465


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 530 ENGQIVPETKEAQKKLFDDAMFRLEHKKGDEDLSKTDK 643
           EN ++V E KE   K   DA+   EH   D++ SKTDK
Sbjct: 431 ENNEVVTEKKETDIK--SDAV---EHSIKDKEDSKTDK 463


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 215 PLLDHSRGDSIDSDLCVRP 159
           P  DH+ GD +  D+CV P
Sbjct: 119 PSFDHAIGDPVVDDICVEP 137


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = -1

Query: 339 WLLHPSHQMLYGISKRMIR--IPMWSFLARSLKAWVPWNLLSPPT 211
           W + P    LY      I    P + F A SL AWV W   + PT
Sbjct: 257 WRISPFRFFLYVFIASFIWNWFPSYIFQALSLFAWVTWIRPNSPT 301


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +2

Query: 203 DPKVGGLNKFQGTHALRERARKLHMGILIIRFEMPYNIWCDGC 331
           D  +G +N +    AL +     + G+ +++   P ++W  GC
Sbjct: 476 DSHIGTIN-YMAPEALTDMNAHTNSGVKLVKLGRPSDVWSLGC 517


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 170 KGQNLYYPPDYDPKVGGLNKFQGTHALRE 256
           K +N    PDYDPK+ GL        LR+
Sbjct: 400 KSKNSLANPDYDPKIYGLQSVLWYSKLRK 428


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -2

Query: 581 QTTFSVLLWFPEQSDRSLWDPICFLVSELLTLSHNPSSLDQ 459
           Q T+ +   +    D+S +D  CF++ +LL +  +   +D+
Sbjct: 338 QLTYYIERQYVSLRDKSSYDESCFIIEQLLYIGLSQDMVDE 378


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 581 DDAMFRLEHKKGDEDLSK 634
           DD  F L+H K D+DL K
Sbjct: 716 DDTSFLLDHSKLDDDLEK 733


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = +3

Query: 90  FVDL*KNTVLNTSINDATVTNPQWANAKVRIYTIPPTMIQKWGDSISSKAPML*ESVPES 269
           +V+   NTV      +   + P +   +  I  I    I++ G ++    P L  S P+ 
Sbjct: 49  YVEQPMNTVEEVDSEEDEESAPAYYPEREAIQLIEKA-IKELGGAV---VPKLNWSTPKD 104

Query: 270 STWVSLSFALKCRTTSGV 323
           + W++ + +LKC T   V
Sbjct: 105 ALWITTTGSLKCTTAEEV 122


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 307 RHFKANDKDTHVELSGTLSQSMGALELIE 221
           +HF AN KD HV+    + ++  A +L E
Sbjct: 421 KHFDANPKDAHVDRLHDVIRTYQAKKLFE 449


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 501 RAPDTIT*SKFPGSVLIS 448
           + PDT+   KFPGSV +S
Sbjct: 449 KIPDTVLPYKFPGSVYLS 466


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 419 MKCHLCD-NHFEIKTDPGNLDYVIVSGARRQENR 517
           M C L D NHF  K +  N+D +  +   + ENR
Sbjct: 56  MDCSLADPNHFIRKVENDNMDAISANINSKLENR 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,544
Number of Sequences: 5004
Number of extensions: 68177
Number of successful extensions: 193
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)