Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3a22
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0693 + 13006243-13006245,13006439-13006501,13006608-130066... 167 7e-42
01_05_0525 + 22928295-22928492,22929435-22929584,22929679-229298... 78 5e-15
01_05_0524 + 22925354-22926229 64 9e-11
03_01_0363 + 2827990-2828055,2828215-2829306,2829715-2829837,282... 30 1.4
11_01_0313 - 2328495-2328936,2330562-2330881 29 2.5
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 29 3.3
08_02_1521 + 27650357-27651064 28 5.7
08_02_0593 + 19078264-19078609,19078724-19082256 28 5.7
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225... 28 7.6
07_03_0960 - 22902279-22902530,22902604-22902726,22902855-229029... 28 7.6
>02_02_0693 +
13006243-13006245,13006439-13006501,13006608-13006687,
13007964-13008072,13009027-13009074,13011044-13011203,
13011295-13011458,13011549-13011902
Length = 326
Score = 167 bits (406), Expect = 7e-42
Identities = 85/185 (45%), Positives = 113/185 (61%), Gaps = 16/185 (8%)
Frame = +2
Query: 152 STMGERKGQNLYYPPDYDPKVGGLNKFQGTHALRERARKLHMGILIIRFEMPYNIWCDGC 331
S++ + N YYPP++ PK GGLNKF G HALRERARKL GILIIRFEMP+NIWC GC
Sbjct: 2 SSLAAARADNFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGC 61
Query: 332 NNHIGMGVRYNAEKKKIGMYYTTP----------------VYQFRMKCHLCDNHFEIKTD 463
N+ I GVR+NAEKK++G YY+T ++ F MK C I+TD
Sbjct: 62 NSMIAKGVRFNAEKKQVGNYYSTKDQGSPNRFGWGYRHPMIWSFTMKSPCCKQEIVIQTD 121
Query: 464 PGNLDYVIVSGARRQENRWDPTENGQIVPETKEAQKKLFDDAMFRLEHKKGDEDLSKTDK 643
P N +YVI+SGA+R+ +D + ++ E + KL D M++LEH++ D K +
Sbjct: 122 PKNTEYVIISGAQRKTEDYDVEDAETLLLPADEERDKL-ADPMYKLEHQEEDLKKKKEAE 180
Query: 644 PRLGR 658
P L R
Sbjct: 181 PVLVR 185
>01_05_0525 +
22928295-22928492,22929435-22929584,22929679-22929813,
22929914-22929979,22931704-22931793,22932414-22932495,
22932703-22932908
Length = 308
Score = 78.2 bits (184), Expect = 5e-15
Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Frame = +2
Query: 158 MGERKGQNLYYPPDYDPKVGGLNKFQGTHALRERARKLHMGILIIRFEMPYNIWCDGCNN 337
MGERK N YYPPD+DP + R R K + +R +P +I C C
Sbjct: 1 MGERKVLNKYYPPDFDP----------SKIPRRRQPKNQQ--IKVRMMLPMSIRCGTCGT 48
Query: 338 HIGMGVRYNAEKKKIG--MYYTTPVYQFRMKCHLCDNHFEIKTDPGNLDYVIVSGARRQE 511
+I G ++N+ K+ + Y +++F KC C KTDP N DY + SGA R
Sbjct: 49 YIYKGTKFNSRKEDVEGEKYLGIQIFRFYFKCTKCSAEITFKTDPQNSDYTVESGASRNF 108
Query: 512 NRWDPTENGQIVP-ETKEAQKKLFDDAMFRLEHKKGD 619
W E ++ E ++ ++ DAM LE++ D
Sbjct: 109 EPW--REEDEVADREKRKRDEEEMGDAMRALENRAMD 143
>01_05_0524 + 22925354-22926229
Length = 291
Score = 64.1 bits (149), Expect = 9e-11
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Frame = +2
Query: 158 MGERKGQNLYYPPDYDPKVGGLNKFQGTHALRERARKLHMGILIIRFEMPYNIWCDGCNN 337
M ERK N +YP D+DP + R+ H +++R +P + C C
Sbjct: 1 MAERKVINKHYPDDFDPS-------------KIPRRRQHKKQMVVRMMLPMTVRCAACGE 47
Query: 338 HIGMGVRYNAEKKKI-GMYY--TTPVYQFRMKCHLCDNHFEIKTDPGNLDYVIVSGARR 505
+IG G ++N+ K+ + G Y V++F ++C C +TDP + Y + SGA R
Sbjct: 48 YIGRGTKFNSRKEDVAGERYLGAVQVFRFYIRCSRCSAEIVFRTDPASAGYALESGATR 106
>03_01_0363 +
2827990-2828055,2828215-2829306,2829715-2829837,
2829994-2830110,2830248-2830429,2830558-2830744,
2830846-2831055,2831177-2831305,2832179-2832247,
2832751-2832873,2832957-2833007,2833101-2833250
Length = 832
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 476 DYVIVSGARRQENRWDPTENGQIVPETKEAQ-KKLFD-DAMFRLEHKKGDED 625
D+++ R RWD TE + E +E + ++ F+ D ++HK G +D
Sbjct: 565 DFIVTGSHDRSIRRWDRTEEQLFIEEEQEKRLEETFEADLDSAMDHKYGQKD 616
>11_01_0313 - 2328495-2328936,2330562-2330881
Length = 253
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 611 SCVLV*TWHRQTTFSVLLWFPEQSDRSLWDP 519
+C+ V T H T VL+ P+QS+R+L+ P
Sbjct: 186 NCLFVGTGHSPRTSQVLINEPDQSNRTLYSP 216
>04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Frame = +2
Query: 326 GCNNHIGMG-VRYNAEKKKIGMYYTTPVYQFRMKCHLCDN-HFEIKTDPGNLDYVIVSGA 499
G N +G G +R++ K+ ++F+ + C + + +P N+ V V
Sbjct: 859 GANIDVGTGSIRFHTNGKE-------EKFEFQPRMEQCTMVRIKYRPNPQNIQVVDVEPP 911
Query: 500 RRQENRWDPTENGQIVPETKEAQKKLFDDAMFRLEHKKGDEDLSK 634
+ + G+I ++EA+ D+A+FR E K+G E+ +K
Sbjct: 912 KTDSLEPLLEDAGKITCTSQEARTAGSDEAIFRTEIKEGVEEEAK 956
>08_02_1521 + 27650357-27651064
Length = 235
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 528 QRTVRLFRKPKKHRKSCLTMPCSD*NTRRVMRI 626
Q +RL +K KKH K LT SD R++++
Sbjct: 121 QSYIRLVKKAKKHSKKTLTKVVSDKEDCRIVKL 153
>08_02_0593 + 19078264-19078609,19078724-19082256
Length = 1292
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 557 KEAQKKLFDDAMFRLEHKKGDEDLSK 634
KEA K+ D+ +F + H DED SK
Sbjct: 1155 KEADKRTNDEYLFDISHNCDDEDCSK 1180
>07_03_0961 -
22921761-22921850,22922204-22922338,22922409-22922531,
22922621-22922707,22922780-22922831,22922939-22923063,
22923724-22923932,22924206-22924407,22924526-22924630,
22925353-22925414,22925755-22925944,22926017-22926112,
22926203-22926305,22927019-22927122,22927264-22927395,
22928257-22928343,22929121-22929206,22929291-22929383,
22932197-22932284,22932402-22932514,22932621-22932743,
22934153-22934204,22934365-22934408,22934498-22934571,
22934655-22934746,22935594-22935661,22937146-22937221,
22937323-22937679
Length = 1055
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 144 VTNPQWANAKVRIYTIPPTMIQKWGDSISSKAPML*ESVPESSTWVSLSFALK 302
+T P W + +PP++IQ W ++APM +P+ + ++ +LK
Sbjct: 544 LTEP-WYGTSYSVEAVPPSIIQNW----VNRAPMEDLHIPKPNIFIPSDLSLK 591
>07_03_0960 -
22902279-22902530,22902604-22902726,22902855-22902941,
22903017-22903068,22903197-22903321,22903476-22903684,
22903990-22904191,22906205-22906309,22907264-22907325,
22907625-22907814,22907887-22907982,22908069-22908171,
22909117-22909220,22910239-22910325,22911238-22911323,
22911410-22911502,22912586-22912673,22912786-22912898,
22912989-22913111,22914473-22914524,22915185-22915286,
22915539-22915582,22915667-22915740,22915825-22915916,
22916566-22916633,22918572-22918647,22918767-22918952
Length = 997
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 144 VTNPQWANAKVRIYTIPPTMIQKWGDSISSKAPML*ESVPESSTWVSLSFALK 302
+T P W + +PP++IQKW + KAP+ +P+ + ++ +LK
Sbjct: 477 LTEP-WYGTSYSVEAVPPSIIQKWVE----KAPVEDLHMPKPNIFLPSDLSLK 524
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,999,706
Number of Sequences: 37544
Number of extensions: 427302
Number of successful extensions: 1013
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -