Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a22
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.9  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 487 SVRSSETRKQMGSHRERSDCSGNQRSTEKVV*RCHVQTRT 606
           S RS E+  +    RE+   S +  STE +  +C+   RT
Sbjct: 322 SPRSPESNSRCSVKREKIKISVSYPSTETLNTKCNTLERT 361


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 59  KIEQSMNACQFC*PLKEYCTKYINKRRN 142
           ++ Q++N CQ   PL+   T  + +R N
Sbjct: 105 EVHQAINTCQPSIPLEPDFTSDVTERDN 132


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 531  SVGSHLFSCLRAPDTIT*SKFPGS 460
            + G+ +++ + AP TIT S+ PG+
Sbjct: 1267 TTGAAVYARVIAPTTITSSQSPGN 1290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,957
Number of Sequences: 438
Number of extensions: 4803
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)