Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3a20
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 40 5e-04
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 36 0.008
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 34 0.023
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 30 0.38
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 29 0.66
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 27 2.0
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.5
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 26 6.2
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.2
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 25 8.2
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 39.5 bits (88), Expect = 5e-04
Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 2/156 (1%)
Frame = +3
Query: 207 SSNVKCLESAGVLELLKPLLSDACSTIRQCAVVAIAKLAEHDLDIARQLLNGGIITITLE 386
+ + + +G + LLS +R+ V A+ +A +L G++ L
Sbjct: 152 TDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWALGNIAGDSSACRDYVLGNGVLQPLLN 211
Query: 387 NLNKY--NVYYKRSALYLLRAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWA 560
L +V R+A + L + + + A+ + L D ++ +A WA
Sbjct: 212 ILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPILAKLLYSEDVEIIVDACWA 271
Query: 561 VGYIGKHSEQLAGLVVDAGTLPLLVLAFQEPEISLK 668
+ Y+ + G ++D G P LV P ++++
Sbjct: 272 ISYLSDGPNEKIGAILDVGCAPRLVELLSSPSVNIQ 307
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/86 (23%), Positives = 39/86 (45%)
Frame = +3
Query: 444 VAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLAGLVVDAGTL 623
++K ++ G ++ V LE ++ AAWA+ I + +VVD+G +
Sbjct: 105 LSKETHPPIDQVIACGVVDRFVQFLESEHHLLQFEAAWALTNIASGTTDQTRIVVDSGAV 164
Query: 624 PLLVLAFQEPEISLKQISAGALVDLA 701
P + PE +++ AL ++A
Sbjct: 165 PRFIQLLSSPEKDVREQVVWALGNIA 190
Score = 32.7 bits (71), Expect = 0.054
Identities = 33/153 (21%), Positives = 62/153 (40%)
Frame = +3
Query: 231 SAGVLELLKPLLSDACSTIRQCAVVAIAKLAEHDLDIARQLLNGGIITITLENLNKYNVY 410
S V L K L S+ I A AI+ L++ + +L+ G +E L+ +V
Sbjct: 247 SVAVPILAKLLYSEDVEIIVD-ACWAISYLSDGPNEKIGAILDVGCAPRLVELLSSPSVN 305
Query: 411 YKRSALYLLRAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQ 590
+ AL + + + I+ GAL S L +++ A W + I + Q
Sbjct: 306 IQTPALRSVGNIVTGTDAQTQIIIDCGALNAFPSLLSHQKENIRKEACWTISNITAGNTQ 365
Query: 591 LAGLVVDAGTLPLLVLAFQEPEISLKQISAGAL 689
++++ +P LV + K+ + A+
Sbjct: 366 QIQAIIESNLIPPLVHLLSYADYKTKKEACWAI 398
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 35.5 bits (78), Expect = 0.008
Identities = 28/150 (18%), Positives = 65/150 (43%)
Frame = +3
Query: 240 VLELLKPLLSDACSTIRQCAVVAIAKLAEHDLDIARQLLNGGIITITLENLNKYNVYYKR 419
V+ +L L+ + A+ AI+ L++ + + +++ GI +E L + +
Sbjct: 249 VIPVLSKLIYTLDEDVLVDALWAISYLSDGANEKIQAIIDAGIPRRLVELLMHPSAQVQT 308
Query: 420 SALYLLRAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLAG 599
AL + + ++ I+ GAL ++S L V++ A W + I +
Sbjct: 309 PALRSVGNIVTGDDVQTQVIINCGALSALLSLLSSPRDGVRKEACWTISNITAGNSSQIQ 368
Query: 600 LVVDAGTLPLLVLAFQEPEISLKQISAGAL 689
V++A +P L+ + +++ + A+
Sbjct: 369 YVIEANIIPPLIHLLTTADFKIQKEACWAI 398
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 33.9 bits (74), Expect = 0.023
Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Frame = +3
Query: 261 LLSDACSTIRQCAVVAIAKLAEHDLDIARQL-LNGGIITITLENLNKYNVYYKRSALYLL 437
LL + I++ A VA+ LA + + A + LNG + + + + +V + +A+ +
Sbjct: 93 LLQSPDAEIQRAASVALGNLAVNAENKALVVKLNG--LDLLIRQMMSPHVEVQCNAVGCI 150
Query: 438 RAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLAGLVVDAG 617
+A +E S I GAL + + D +V+ NA A+ + HS + +V AG
Sbjct: 151 TNLATLDEN-KSKIAHSGALGPLTRLAKSKDIRVQRNATGALLNM-THSYENRQQLVSAG 208
Query: 618 TLPLLVLAFQEPEISLKQISAGALVDLA 701
T+P+LV + ++ ++ ++A
Sbjct: 209 TIPVLVSLLPSSDTDVQYYCTTSISNIA 236
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 29.9 bits (64), Expect = 0.38
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 633 LTRVVCLHLQPNRPIAHCAFQC 568
LT + LH+QP PI C++ C
Sbjct: 827 LTSTIFLHIQPKEPIIFCSWNC 848
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 29.1 bits (62), Expect = 0.66
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 300 VVAIAKLAEHDLDIARQ---LLNGGIITITLENLNKYNVYYKRSALYLLRAVAKHNEELA 470
V + K+ + D+A + + IIT + + + + + ++ + NEE
Sbjct: 537 VPGLKKVIQRAFDVANEEDEMKAANIITDDFDYTSDLTSFLTFAGIPVVNLAFERNEENP 596
Query: 471 SAIVRLGALEHIVSCLEDFDTQVKENAA 554
+ + LG+ E VS ++ F ++ ENAA
Sbjct: 597 TPMPFLGSCEDTVSWIDTFGSEYWENAA 624
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +3
Query: 543 ENAAWAVGYIGKHSEQLAGLVVDAGTLPLLV 635
++A WA+G IGK ++Q +++ T+PL+V
Sbjct: 1098 KSALWAIGNIGK-TDQGITFLINHDTIPLIV 1127
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 38 FLSKRKYCKTFSFDFVEYHLNHEPLNEQSKEYTVSFRNISEGTISFCPN 184
F +Y K F D +Y + + LN+ T++FR+ E F N
Sbjct: 254 FNQPMQYSKQFKLDNPDYEASSDSLNDIENLSTLTFRSDEELEFDFDTN 302
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.6 bits (56), Expect = 3.5
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = +3
Query: 246 ELLKPLLSDACSTIRQCAVVAIAKLAEHDLDIARQLLNGGIITITLENLNKYNVYYKRSA 425
E PLL D S + + V + A H L IA LL + + + + R+
Sbjct: 84 ETFIPLLEDTLSLLEKERPVFSSLAATHRLRIA--LLE---LLKKSGSYKGFEAFVNRTF 138
Query: 426 LYLLRAVAKHNEELASAIVRLGAL 497
LLR V NEE+A ++L L
Sbjct: 139 AVLLRIVVNDNEEMAVLALKLVVL 162
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +3
Query: 405 VYYKRSALYLLRAVAKHNEELASAIVRLGALEHIVSCLE-DFDTQVKENAAWAVGYIGKH 581
++Y A + + + L ++ LG++EH + C + ++ N V +
Sbjct: 309 IFYDIEAYMSVTSSLPSIQSLVLRLIHLGSIEHAIKCFQSSYNASFLVNIVGVVATLSSS 368
Query: 582 SEQ 590
SE+
Sbjct: 369 SEE 371
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = -3
Query: 631 NKGSVPASTTKPANCSLCFPM*-PTA----QAAFSLT*VSKSSRQETMCSKAPRRTIA 473
++ +P++ K + LC P+ PT A S + SR+ + ++PRRTIA
Sbjct: 99 SRSPIPSTRLKENDSRLCSPLASPTGGLKRPAKVSFALANTPSRKGNLVPQSPRRTIA 156
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 387 NLNKYNVYYKRSALYLL 437
N NK+NVY ++++YLL
Sbjct: 46 NTNKHNVYSTKNSMYLL 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,955
Number of Sequences: 5004
Number of extensions: 57936
Number of successful extensions: 147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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