Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3a20
(717 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 42 3e-04
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 42 3e-04
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 42 3e-04
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 40 0.002
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 40 0.002
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 40 0.002
AF016686-6|ABO16457.1| 416|Caenorhabditis elegans Hypothetical ... 33 0.27
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ... 33 0.27
Z68337-2|CAA92746.2| 516|Caenorhabditis elegans Hypothetical pr... 30 1.4
U28991-2|AAK68307.1| 679|Caenorhabditis elegans Kinesin-associa... 28 7.7
U28991-1|AAM22059.1| 696|Caenorhabditis elegans Kinesin-associa... 28 7.7
AF149287-1|AAF99086.1| 696|Caenorhabditis elegans KAP protein. 28 7.7
AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans AP... 28 7.7
AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans AP... 28 7.7
AB017107-1|BAA88838.1| 679|Caenorhabditis elegans Kinesin assoc... 28 7.7
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = +3
Query: 423 ALYLLRAVAKHNEELASAIVRLGALEHIVSCLEDF-DTQVKENAAWAVGYIGKHSEQLAG 599
AL L VA N+ L A++ LG+L+ I+ +E + + + W V I +++
Sbjct: 322 ALRTLGNVATGNDSLTQAVIDLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQ 381
Query: 600 LVVDAGTLPLLVLAFQEPEISLKQISAGALVDLAQ 704
V+DA LP+L+ + + + ++ AL +LAQ
Sbjct: 382 AVLDANLLPVLINVLKSGDHKCQFEASWALSNLAQ 416
Score = 40.7 bits (91), Expect = 0.001
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Frame = +3
Query: 234 AGVLELLKPLLSDACSTIRQCAVVAIAKLAEHDLDIARQLLN-GGIITIT--LENLNKYN 404
AGV L L + I + A+ A+A +A + ++ G+ + +E +++
Sbjct: 173 AGVTIPLIHLSVHQSAQISEQALWAVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLG 232
Query: 405 VYYKRSALYLLRAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHS 584
+ R+ + + +H A V + +V ++ D QV+++A WAV Y+
Sbjct: 233 DSHVRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYLTDGP 292
Query: 585 EQLAGLVVDAGTLPLLVLAFQEPE 656
++ L ++G LP +V F+E E
Sbjct: 293 DEQIELARESGVLPHVVAFFKEAE 316
Score = 33.5 bits (73), Expect = 0.15
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +3
Query: 432 LLRAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLAGLVVD 611
L ++++K ++ G L+ +V L + +V+ AAWA+ I S + V+
Sbjct: 113 LRKSLSKTKNPPIDEVIHCGLLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAAVE 172
Query: 612 AG-TLPLLVLA-FQEPEISLKQISAGA 686
AG T+PL+ L+ Q +IS + + A A
Sbjct: 173 AGVTIPLIHLSVHQSAQISEQALWAVA 199
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = +3
Query: 423 ALYLLRAVAKHNEELASAIVRLGALEHIVSCLEDF-DTQVKENAAWAVGYIGKHSEQLAG 599
AL L VA N+ L A++ LG+L+ I+ +E + + + W V I +++
Sbjct: 322 ALRTLGNVATGNDSLTQAVIDLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQ 381
Query: 600 LVVDAGTLPLLVLAFQEPEISLKQISAGALVDLAQ 704
V+DA LP+L+ + + + ++ AL +LAQ
Sbjct: 382 AVLDANLLPVLINVLKSGDHKCQFEASWALSNLAQ 416
Score = 40.7 bits (91), Expect = 0.001
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Frame = +3
Query: 234 AGVLELLKPLLSDACSTIRQCAVVAIAKLAEHDLDIARQLLN-GGIITIT--LENLNKYN 404
AGV L L + I + A+ A+A +A + ++ G+ + +E +++
Sbjct: 173 AGVTIPLIHLSVHQSAQISEQALWAVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLG 232
Query: 405 VYYKRSALYLLRAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHS 584
+ R+ + + +H A V + +V ++ D QV+++A WAV Y+
Sbjct: 233 DSHVRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYLTDGP 292
Query: 585 EQLAGLVVDAGTLPLLVLAFQEPE 656
++ L ++G LP +V F+E E
Sbjct: 293 DEQIELARESGVLPHVVAFFKEAE 316
Score = 33.5 bits (73), Expect = 0.15
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +3
Query: 432 LLRAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLAGLVVD 611
L ++++K ++ G L+ +V L + +V+ AAWA+ I S + V+
Sbjct: 113 LRKSLSKTKNPPIDEVIHCGLLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAAVE 172
Query: 612 AG-TLPLLVLA-FQEPEISLKQISAGA 686
AG T+PL+ L+ Q +IS + + A A
Sbjct: 173 AGVTIPLIHLSVHQSAQISEQALWAVA 199
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = +3
Query: 423 ALYLLRAVAKHNEELASAIVRLGALEHIVSCLEDF-DTQVKENAAWAVGYIGKHSEQLAG 599
AL L VA N+ L A++ LG+L+ I+ +E + + + W V I +++
Sbjct: 322 ALRTLGNVATGNDSLTQAVIDLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQ 381
Query: 600 LVVDAGTLPLLVLAFQEPEISLKQISAGALVDLAQ 704
V+DA LP+L+ + + + ++ AL +LAQ
Sbjct: 382 AVLDANLLPVLINVLKSGDHKCQFEASWALSNLAQ 416
Score = 40.7 bits (91), Expect = 0.001
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Frame = +3
Query: 234 AGVLELLKPLLSDACSTIRQCAVVAIAKLAEHDLDIARQLLN-GGIITIT--LENLNKYN 404
AGV L L + I + A+ A+A +A + ++ G+ + +E +++
Sbjct: 173 AGVTIPLIHLSVHQSAQISEQALWAVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLG 232
Query: 405 VYYKRSALYLLRAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHS 584
+ R+ + + +H A V + +V ++ D QV+++A WAV Y+
Sbjct: 233 DSHVRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYLTDGP 292
Query: 585 EQLAGLVVDAGTLPLLVLAFQEPE 656
++ L ++G LP +V F+E E
Sbjct: 293 DEQIELARESGVLPHVVAFFKEAE 316
Score = 33.5 bits (73), Expect = 0.15
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +3
Query: 432 LLRAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLAGLVVD 611
L ++++K ++ G L+ +V L + +V+ AAWA+ I S + V+
Sbjct: 113 LRKSLSKTKNPPIDEVIHCGLLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAAVE 172
Query: 612 AG-TLPLLVLA-FQEPEISLKQISAGA 686
AG T+PL+ L+ Q +IS + + A A
Sbjct: 173 AGVTIPLIHLSVHQSAQISEQALWAVA 199
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/150 (18%), Positives = 65/150 (43%)
Frame = +3
Query: 240 VLELLKPLLSDACSTIRQCAVVAIAKLAEHDLDIARQLLNGGIITITLENLNKYNVYYKR 419
+L L L+ + I V A++ L + + + ++ ++T + L +V +
Sbjct: 236 ILPALSLLIHHQDTNILIDTVWALSYLTDGGNEHIQMVIEAQVVTHLVPLLGHVDVKVQT 295
Query: 420 SALYLLRAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLAG 599
+AL + + +E ++ G L + L + ++ + A W V I ++Q
Sbjct: 296 AALRAVGNIVTGTDEQTQLVLDSGVLRFMPGLLAHYKEKINKEAVWFVSNITAGNQQQVQ 355
Query: 600 LVVDAGTLPLLVLAFQEPEISLKQISAGAL 689
V DAG +P+++ + ++ +A A+
Sbjct: 356 DVFDAGIMPMIIHLLDRGDFPTQKEAAWAI 385
Score = 36.7 bits (81), Expect = 0.017
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = +3
Query: 477 IVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLAGLVVDAGTLPLLVLAFQEPE 656
++ G L +V CL D ++ AAWA+ I + + VV+AG +PL +
Sbjct: 104 LIGSGILPVLVQCLSSTDPNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGN 163
Query: 657 ISLKQISAGALVDLAQHKP 713
+++ + S AL ++ P
Sbjct: 164 LNVCEQSVWALGNIIGDGP 182
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/150 (18%), Positives = 65/150 (43%)
Frame = +3
Query: 240 VLELLKPLLSDACSTIRQCAVVAIAKLAEHDLDIARQLLNGGIITITLENLNKYNVYYKR 419
+L L L+ + I V A++ L + + + ++ ++T + L +V +
Sbjct: 236 ILPALSLLIHHQDTNILIDTVWALSYLTDGGNEHIQMVIEAQVVTHLVPLLGHVDVKVQT 295
Query: 420 SALYLLRAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLAG 599
+AL + + +E ++ G L + L + ++ + A W V I ++Q
Sbjct: 296 AALRAVGNIVTGTDEQTQLVLDSGVLRFMPGLLAHYKEKINKEAVWFVSNITAGNQQQVQ 355
Query: 600 LVVDAGTLPLLVLAFQEPEISLKQISAGAL 689
V DAG +P+++ + ++ +A A+
Sbjct: 356 DVFDAGIMPMIIHLLDRGDFPTQKEAAWAI 385
Score = 36.7 bits (81), Expect = 0.017
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = +3
Query: 477 IVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLAGLVVDAGTLPLLVLAFQEPE 656
++ G L +V CL D ++ AAWA+ I + + VV+AG +PL +
Sbjct: 104 LIGSGILPVLVQCLSSTDPNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGN 163
Query: 657 ISLKQISAGALVDLAQHKP 713
+++ + S AL ++ P
Sbjct: 164 LNVCEQSVWALGNIIGDGP 182
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/150 (18%), Positives = 65/150 (43%)
Frame = +3
Query: 240 VLELLKPLLSDACSTIRQCAVVAIAKLAEHDLDIARQLLNGGIITITLENLNKYNVYYKR 419
+L L L+ + I V A++ L + + + ++ ++T + L +V +
Sbjct: 145 ILPALSLLIHHQDTNILIDTVWALSYLTDGGNEHIQMVIEAQVVTHLVPLLGHVDVKVQT 204
Query: 420 SALYLLRAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLAG 599
+AL + + +E ++ G L + L + ++ + A W V I ++Q
Sbjct: 205 AALRAVGNIVTGTDEQTQLVLDSGVLRFMPGLLAHYKEKINKEAVWFVSNITAGNQQQVQ 264
Query: 600 LVVDAGTLPLLVLAFQEPEISLKQISAGAL 689
V DAG +P+++ + ++ +A A+
Sbjct: 265 DVFDAGIMPMIIHLLDRGDFPTQKEAAWAI 294
Score = 36.7 bits (81), Expect = 0.017
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = +3
Query: 477 IVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLAGLVVDAGTLPLLVLAFQEPE 656
++ G L +V CL D ++ AAWA+ I + + VV+AG +PL +
Sbjct: 13 LIGSGILPVLVQCLSSTDPNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGN 72
Query: 657 ISLKQISAGALVDLAQHKP 713
+++ + S AL ++ P
Sbjct: 73 LNVCEQSVWALGNIIGDGP 91
>AF016686-6|ABO16457.1| 416|Caenorhabditis elegans Hypothetical
protein R07C3.15 protein.
Length = 416
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +3
Query: 213 NVKCLESAGVLELLKPLLSDACSTIRQCAVVAIAKLAEHDLDIARQL-LNGGIITITLEN 389
++ C E+ +L +KPLL+ + ++ ++ + A+ + I+RQL ++ + L N
Sbjct: 257 DIGCWETEKLLNTIKPLLTFSSFPLKSLSIYGDSHFADPIIQISRQLCISTQVAIARLAN 316
Query: 390 L--NKYNVYYKRSALYLLRAVAK 452
L NV+ K+ + Y++ K
Sbjct: 317 LRYGHRNVFVKKMSKYMINDFLK 339
>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
protein R10F2.1 protein.
Length = 2779
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 195 LATRSSNVKCLESAGVLELLKPLLSDACSTIRQCAVVA 308
++ R S VK E G++ L KPL+S TI Q VVA
Sbjct: 2481 ISDRQSTVKIEEHTGIIRLQKPLVSRRNLTIEQITVVA 2518
>Z68337-2|CAA92746.2| 516|Caenorhabditis elegans Hypothetical
protein M7.2 protein.
Length = 516
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 336 DIARQLLNGGIITITLENLNKYNVYYKRSALYLLRAVAKHNEEL 467
D+A+QL N GI+T LE + Y+K++ RA ++++ +
Sbjct: 325 DVAKQLTNLGIVTQQLEKYEETENYFKQALSIYNRAFPENHQNV 368
>U28991-2|AAK68307.1| 679|Caenorhabditis elegans Kinesin-associated
protein protein1, isoform b protein.
Length = 679
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 426 LYLLRAVAKHNEELASAIVRLGAL-EHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLA 596
LY+ KH E A + + AL H++ + D + V+E A+ +G+HS++ A
Sbjct: 568 LYVFLQFLKHKELSARLMTQDSALGAHMIDLMHDANAVVREVCDNALLIMGEHSKEWA 625
>U28991-1|AAM22059.1| 696|Caenorhabditis elegans Kinesin-associated
protein protein1, isoform a protein.
Length = 696
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 426 LYLLRAVAKHNEELASAIVRLGAL-EHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLA 596
LY+ KH E A + + AL H++ + D + V+E A+ +G+HS++ A
Sbjct: 585 LYVFLQFLKHKELSARLMTQDSALGAHMIDLMHDANAVVREVCDNALLIMGEHSKEWA 642
>AF149287-1|AAF99086.1| 696|Caenorhabditis elegans KAP protein.
Length = 696
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 426 LYLLRAVAKHNEELASAIVRLGAL-EHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLA 596
LY+ KH E A + + AL H++ + D + V+E A+ +G+HS++ A
Sbjct: 585 LYVFLQFLKHKELSARLMTQDSALGAHMIDLMHDANAVVREVCDNALLIMGEHSKEWA 642
>AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans APB-1
protein, isoform c protein.
Length = 827
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 213 NVKCLESAGVLELLKPLLSDACSTIRQCAVVAIAKLAEHD--LDIARQLLN 359
N ++ G +ELL LLSDA + AV A+ ++ E +++ Q++N
Sbjct: 152 NPALVKEQGFVELLNDLLSDANPMVVANAVAALTEMNEQQTVIEVNSQMVN 202
>AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans APB-1
protein, isoform a protein.
Length = 955
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 213 NVKCLESAGVLELLKPLLSDACSTIRQCAVVAIAKLAEHD--LDIARQLLN 359
N ++ G +ELL LLSDA + AV A+ ++ E +++ Q++N
Sbjct: 152 NPALVKEQGFVELLNDLLSDANPMVVANAVAALTEMNEQQTVIEVNSQMVN 202
>AB017107-1|BAA88838.1| 679|Caenorhabditis elegans Kinesin
associated protein kap-1 protein.
Length = 679
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 426 LYLLRAVAKHNEELASAIVRLGAL-EHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLA 596
LY+ KH E A + + AL H++ + D + V+E A+ +G+HS++ A
Sbjct: 568 LYVFLQFLKHKELSARLMTQDSALGAHMIDLMHDANAVVREVCDNALLIMGEHSKEWA 625
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,997,932
Number of Sequences: 27780
Number of extensions: 333750
Number of successful extensions: 837
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -