Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a18
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    27   0.53 
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    24   6.6  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    24   6.6  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    24   6.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    24   6.6  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    23   8.7  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    23   8.7  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1073

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -3

Query: 264  SIGCH---YCDTSETGVRSLQIERENHCNALCEEEKYQYPPLESVKIRKQIXY*TXSYRR 94
            SIG H   Y    + GV+ L ++ +  CN+ CE       P+ S+   K   Y T S R 
Sbjct: 886  SIGKHGLCYATGRKIGVKMLDLDSKKFCNSDCELPVRS--PIVSMSTYKDYVY-TSSLRD 942

Query: 93   NVSV 82
            +V+V
Sbjct: 943  SVAV 946


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 105 SYRRNVSVNRLLLMWNRS 52
           SY  +V +NR L  WN S
Sbjct: 33  SYAEHVPLNRYLTQWNNS 50


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 131 ENKYXIKHXHIDVTYQLIDY 72
           +  + +KH  +DV+YQ+ D+
Sbjct: 548 DGSFMVKHYALDVSYQVHDF 567


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 141 RTQAVDIDTFPLHIVH 188
           +T A DI +FP HIV+
Sbjct: 112 KTMAKDIKSFPFHIVN 127


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 168  FPLHIVHYNDFH 203
            FPL I H ND+H
Sbjct: 1299 FPLDIYHVNDYH 1310


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 174 LHIVHYNDFHARFEE 218
           ++ VHYND++ R +E
Sbjct: 51  VYYVHYNDYNKRLDE 65


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 273 ILPSIGCHYCDTSETGVRSLQIERENHCNALCEEEKY 163
           +LP I     DTS TG+  +Q +  +    L E   Y
Sbjct: 19  LLPEIIISQTDTSSTGIYQMQSKVRSLVPVLTERSDY 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,153,039
Number of Sequences: 5004
Number of extensions: 19352
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)