Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a18
         (320 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0477 + 3431509-3431551,3432243-3432319,3432417-3432542,343...    30   0.35 
08_01_0985 - 9960064-9960249,9960327-9960419,9960518-9960578,996...    26   7.6  

>02_01_0477 +
           3431509-3431551,3432243-3432319,3432417-3432542,
           3432638-3432715,3432797-3432952,3433044-3433140,
           3433595-3433817,3440445-3440760,3440895-3441390,
           3441485-3441651
          Length = 592

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -3

Query: 282 DERILPSIGCHYCDTSETGVRSLQIERENHCNALCEEEKYQYPPLESVKIRKQI 121
           D  IL + G H C        +  +E + H N L +EE+ + P   + K RK I
Sbjct: 465 DSMILEAHGNHTCQVQSNATNNAVVEGQQHGN-LNDEEEIEDPEQANTKGRKSI 517


>08_01_0985 -
           9960064-9960249,9960327-9960419,9960518-9960578,
           9960667-9960774,9960921-9961106,9961427-9962421,
           9962626-9962988,9963085-9963333,9963419-9963574
          Length = 798

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 190 TMIFTLDLKRPHSSFRCVAIMTPNAWEDSL 279
           T + T  +K+  + F   A +TPN W+D L
Sbjct: 161 TTLHTKFVKKGRTPFSTYANITPNQWDDFL 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,988,098
Number of Sequences: 37544
Number of extensions: 107973
Number of successful extensions: 261
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)