Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3a18
(320 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical pr... 30 0.32
DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein. 30 0.32
AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transpor... 30 0.32
U97194-2|AAN84846.1| 806|Caenorhabditis elegans Prion-like-(q/n... 28 1.7
U97194-1|AAK68236.1| 788|Caenorhabditis elegans Prion-like-(q/n... 28 1.7
AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative MAP-... 28 1.7
Z78067-1|CAB01533.1| 1170|Caenorhabditis elegans Hypothetical pr... 27 2.3
AL117204-14|CAB55155.1| 264|Caenorhabditis elegans Hypothetical... 27 4.0
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 25 9.2
AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical ... 25 9.2
AC024771-2|AAK70659.1| 697|Caenorhabditis elegans Hypothetical ... 25 9.2
AC024755-7|AAO91688.1| 833|Caenorhabditis elegans Hypothetical ... 25 9.2
AC024755-6|AAF59639.1| 877|Caenorhabditis elegans Hypothetical ... 25 9.2
>Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical
protein T03F7.1 protein.
Length = 610
Score = 30.3 bits (65), Expect = 0.32
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 136 FYGLKRWILILFLFT*CITMIFTLDLKRPHSSFRCVAIMTPNAW 267
FY W L+ LF CI + ++L + R + + + P+AW
Sbjct: 463 FYAASGWALLWLLFFECIAISWSLGIDRWYEHMKSMIGYYPSAW 506
>DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein.
Length = 610
Score = 30.3 bits (65), Expect = 0.32
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 136 FYGLKRWILILFLFT*CITMIFTLDLKRPHSSFRCVAIMTPNAW 267
FY W L+ LF CI + ++L + R + + + P+AW
Sbjct: 463 FYAASGWALLWLLFFECIAISWSLGIDRWYEHMKSMIGYYPSAW 506
>AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transporter
protein protein.
Length = 610
Score = 30.3 bits (65), Expect = 0.32
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 136 FYGLKRWILILFLFT*CITMIFTLDLKRPHSSFRCVAIMTPNAW 267
FY W L+ LF CI + ++L + R + + + P+AW
Sbjct: 463 FYAASGWALLWLLFFECIAISWSLGIDRWYEHMKSMIGYYPSAW 506
>U97194-2|AAN84846.1| 806|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform b protein.
Length = 806
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 141 RTQAVDIDTFPLHIVHYNDFHARFEETS-LQFPMCRNN 251
+ + V++D LH HY+ RF++T+ L++ + +N+
Sbjct: 418 KCELVEVDVAQLHDCHYDGCEKRFQKTTDLEYHISKNH 455
>U97194-1|AAK68236.1| 788|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform a protein.
Length = 788
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 141 RTQAVDIDTFPLHIVHYNDFHARFEETS-LQFPMCRNN 251
+ + V++D LH HY+ RF++T+ L++ + +N+
Sbjct: 400 KCELVEVDVAQLHDCHYDGCEKRFQKTTDLEYHISKNH 437
>AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative
MAP-like protein protein.
Length = 788
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 141 RTQAVDIDTFPLHIVHYNDFHARFEETS-LQFPMCRNN 251
+ + V++D LH HY+ RF++T+ L++ + +N+
Sbjct: 400 KCELVEVDVAQLHDCHYDGCEKRFQKTTDLEYHISKNH 437
>Z78067-1|CAB01533.1| 1170|Caenorhabditis elegans Hypothetical
protein ZC412.2 protein.
Length = 1170
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = -1
Query: 296 YLMVKTSESSQALGVIIATHRKLE*GLFKSSVKIIVMHYVKRKSI 162
+L V+ + + A G+ +A RKL+ +F S+ +++ +KRK +
Sbjct: 521 FLKVEERKYTYAYGIAMAKSRKLKSQVFPFSITLLLNFRMKRKEM 565
>AL117204-14|CAB55155.1| 264|Caenorhabditis elegans Hypothetical
protein Y116A8C.23 protein.
Length = 264
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 145 LKRWILILFLFT*CITMIF 201
+K W+LILF C+T++F
Sbjct: 152 VKTWMLILFFLITCVTILF 170
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 156 DIDTFPLHIVHYNDFHARFEETSLQFPMCRNNDTQCLGGFARLYH 290
++ LH V Y+ ++ + +C+ D +G FAR+YH
Sbjct: 4032 EVAAHKLHPVFYSFPAVQYSGILEKTALCKEVDEVPIGRFARVYH 4076
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 156 DIDTFPLHIVHYNDFHARFEETSLQFPMCRNNDTQCLGGFARLYH 290
++ LH V Y+ ++ + +C+ D +G FAR+YH
Sbjct: 4021 EVAAHKLHPVFYSFPAVQYSGILEKTALCKEVDEVPIGRFARVYH 4065
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 156 DIDTFPLHIVHYNDFHARFEETSLQFPMCRNNDTQCLGGFARLYH 290
++ LH V Y+ ++ + +C+ D +G FAR+YH
Sbjct: 4021 EVAAHKLHPVFYSFPAVQYSGILEKTALCKEVDEVPIGRFARVYH 4065
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 156 DIDTFPLHIVHYNDFHARFEETSLQFPMCRNNDTQCLGGFARLYH 290
++ LH V Y+ ++ + +C+ D +G FAR+YH
Sbjct: 4032 EVAAHKLHPVFYSFPAVQYSGILEKTALCKEVDEVPIGRFARVYH 4076
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 156 DIDTFPLHIVHYNDFHARFEETSLQFPMCRNNDTQCLGGFARLYH 290
++ LH V Y+ ++ + +C+ D +G FAR+YH
Sbjct: 4021 EVAAHKLHPVFYSFPAVQYSGILEKTALCKEVDEVPIGRFARVYH 4065
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 156 DIDTFPLHIVHYNDFHARFEETSLQFPMCRNNDTQCLGGFARLYH 290
++ LH V Y+ ++ + +C+ D +G FAR+YH
Sbjct: 4021 EVAAHKLHPVFYSFPAVQYSGILEKTALCKEVDEVPIGRFARVYH 4065
>AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical
protein F42G2.5 protein.
Length = 374
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 255 CHYCDTSETGVRSLQIERENHCNALCEEEK-YQYPPLESVKIRKQI 121
C +C +ET V S+ +N ++K + PPLE K+R+Q+
Sbjct: 175 CPFC-RNETNVSSVASLPKNFALLQAIDQKTLRVPPLEIAKLRQQL 219
>AC024771-2|AAK70659.1| 697|Caenorhabditis elegans Hypothetical
protein Y40B10A.4 protein.
Length = 697
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 147 QAVDIDTFPL-HIVHYNDFHARFEETSLQ 230
+ ++ T P+ + +H N FH R E SL+
Sbjct: 197 EQTNVTTIPIDNFLHLNKFHVRLERFSLE 225
>AC024755-7|AAO91688.1| 833|Caenorhabditis elegans Hypothetical
protein Y34B4A.4b protein.
Length = 833
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 267 PSIGCHYCDTSETGVRSLQIER-ENHCNALCEEEKYQYPPLESVKIRK 127
P IG D + + + ER E H +CEEE + P ++++K
Sbjct: 139 PDIGDDSDDENGITTKQKEEERAEQHGQKVCEEEVVKLPDGREIRMKK 186
>AC024755-6|AAF59639.1| 877|Caenorhabditis elegans Hypothetical
protein Y34B4A.4a protein.
Length = 877
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 267 PSIGCHYCDTSETGVRSLQIER-ENHCNALCEEEKYQYPPLESVKIRK 127
P IG D + + + ER E H +CEEE + P ++++K
Sbjct: 139 PDIGDDSDDENGITTKQKEEERAEQHGQKVCEEEVVKLPDGREIRMKK 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,200,000
Number of Sequences: 27780
Number of extensions: 103948
Number of successful extensions: 305
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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