Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a18
         (320 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   0.91 
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    20   6.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   6.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 0.91
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 306 PTSLSHGKDERILPSIGCH 250
           PT L  G  +  LPS GCH
Sbjct: 230 PTFLCKGDGKWYLPSGGCH 248


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 240 TSETGVRSLQIERENHCN 187
           TS T  ++L++E+E H N
Sbjct: 13  TSYTRYQTLELEKEFHFN 30


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -3

Query: 282 DERILPSIGCHYCDTSETGVRSLQIERENHCNALCEEEKYQYPP 151
           DE + P     Y D S    R L  +  +    + +EE+ +Y P
Sbjct: 317 DEFLPPPPNLDYHDYSRQFPRDLTTQTVSTTADVLQEEEEEYSP 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,497
Number of Sequences: 438
Number of extensions: 1234
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)