Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a15
         (729 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54FT1 Cluster: Putative uncharacterized protein; n=1; ...    38   0.33 
UniRef50_Q244X5 Cluster: Putative uncharacterized protein; n=2; ...    35   2.3  
UniRef50_Q8R9B0 Cluster: Formate hydrogenlyase subunit 3/Multisu...    34   3.1  
UniRef50_Q98RR7 Cluster: Guanine nucleotide binding-like protein...    34   3.1  
UniRef50_A0DGH5 Cluster: Chromosome undetermined scaffold_5, who...    33   7.2  

>UniRef50_Q54FT1 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 384

 Score = 37.5 bits (83), Expect = 0.33
 Identities = 34/112 (30%), Positives = 49/112 (43%)
 Frame = -1

Query: 633 IILMLQEKRNFPSFMKKPQKCFNQIFSKICIVQYTKNTKSNKFAVHK**NKFLGKKIAFG 454
           +I + +E  N+ S  K  +KC+  +F K      T  T + K  ++K  NK   K     
Sbjct: 1   MITISEELENY-SLSKFFEKCYYYLF-KNWSTTTTTTTATTKTKLNK--NKISKKNEKNH 56

Query: 453 MSHHIEC*NTT*NRFPKTKNQNSCNSNNH*IKN*YVSELEKDRSIFNRNNLK 298
           +SH  +      N      N N CNSNN+   N    + EK+  I N NN K
Sbjct: 57  ISHQTQYIKNDNNSL-NNSNSNCCNSNNNDSNNNIKLKNEKEELINNNNNEK 107


>UniRef50_Q244X5 Cluster: Putative uncharacterized protein; n=2;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 749

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 198 LQQNGREMLFLPAEQCSNSHFRSEMLLENYSKK-PSNCFC*KLIGLFQVQKHINSL 362
           L Q   +M+ +  EQC+  HFR +   + ++K+  +N FC K+  + Q++   NSL
Sbjct: 127 LYQQSIKMIPIELEQCTKDHFRIDGTQDYFTKQIYNNMFCFKMDQVIQLEGDYNSL 182


>UniRef50_Q8R9B0 Cluster: Formate hydrogenlyase subunit
           3/Multisubunit Na+/H+ antiporter, MnhD subunit; n=1;
           Thermoanaerobacter tengcongensis|Rep: Formate
           hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter,
           MnhD subunit - Thermoanaerobacter tengcongensis
          Length = 673

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +1

Query: 409 KAVLRGILTFNVM*HSKCNLFT*KFILLFMYCKFIRFCVFRVLNYTNLTKNL--IETFLR 582
           +A+  G + F VM H    L    FIL ++Y     F  FR  N + + KNL  +  FL 
Sbjct: 161 EAIKAGFVYF-VMAHVGTVLIMISFILFYVYTGTFDFAAFRNANLSPVIKNLAFLLAFLG 219

Query: 583 FLHKAGEVP 609
           F  KAG VP
Sbjct: 220 FGVKAGIVP 228


>UniRef50_Q98RR7 Cluster: Guanine nucleotide binding-like protein;
           n=1; Guillardia theta|Rep: Guanine nucleotide
           binding-like protein - Guillardia theta (Cryptomonas
           phi)
          Length = 680

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
 Frame = +1

Query: 112 Y*FHFFTSQNNIFLTLT--TDYKLRVISEIDSNRMDEKCSFFQLNSAQTVTSVLKCC*KI 285
           Y F+ F  + NIF  LT  T YK+  I   D  ++    + + L++   +  VL C  K 
Sbjct: 259 YRFNIFHYKLNIFTKLTEKTYYKINYIKVYDL-KIHHFSNIYNLSNYNLL--VLLCFKK- 314

Query: 286 TLKNLQIVSVKN*SVFFKFRNIS--ILYLMIVRIA*ILVFGFWKAVLR-GILTFNV 444
             KN+ I+++ N   FFK RNIS  I    +   + +L  G +K  ++  I++ NV
Sbjct: 315 --KNIIILNLDNQKFFFKHRNISDQISNYSVSNNSKVLALGNYKGEIQIWIISLNV 368


>UniRef50_A0DGH5 Cluster: Chromosome undetermined scaffold_5, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_5,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1482

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
 Frame = +3

Query: 381 CMNFGFWFLESGFTWYF--NIQCD---VTFQMQSFYLEIYFIIYVLQIYSILCFSCIE 539
           C  F  + +  G   YF  +IQC+   +   +  FY  + FII++L I+ +L F+ ++
Sbjct: 154 CFTFAIFLVLLGLITYFQRDIQCNFNRLNVPIYHFYSPVLFIIHLLDIFRVLVFTILK 211


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 632,155,491
Number of Sequences: 1657284
Number of extensions: 12211484
Number of successful extensions: 29779
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29655
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)