Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a15
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.0  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 67  RRLNLKEVMLTELWVY*FHFFTSQNNIFLTLTTDYKLRVISE 192
           + L+L   ML  +W    +F+  +++   T+T   KL  IS+
Sbjct: 105 KSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQ 146


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -2

Query: 497 INNKINF*VKRLHLECHITLNVKIPRKTAFQKPKTKIHA 381
           +N+ +N  + R  L+C  T+N   P +  ++K +T +++
Sbjct: 550 LNSGLNK-ITRNSLDCFFTMNDLEPSEIFYEKIETSLNS 587


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -2

Query: 497 INNKINF*VKRLHLECHITLNVKIPRKTAFQKPKTKIHA 381
           +N+ +N  + R  L+C  T+N   P +  ++K +T +++
Sbjct: 550 LNSGLNK-ITRNSLDCFFTMNDLEPSEIFYEKIETSLNS 587


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 459 MQSFYLEIYFIIYVLQIYSILCFSCIEL 542
           M++ +  ++ II VL    ++CF C ++
Sbjct: 4   MKNIFPVLFVIINVLLHGQVICFVCKDI 31


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 718 IFCNGLIS*CYDNFRTFRSDGASFPCQLNN 629
           I  NG++S      RT RSD A F C   N
Sbjct: 831 ILANGVLSDLSIK-RTERSDSALFTCVATN 859


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,107
Number of Sequences: 438
Number of extensions: 4038
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)