Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a13
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    30   0.39 
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    30   0.39 
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    29   0.68 
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.90 
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    27   2.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   4.8  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   6.3  

>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 711 VFLLNSSAIRDIFRRVPTCLVNSAAIS*SVFVFIDAS 601
           + LL +  I  +F  VPTC++ S  +S  V +F DA+
Sbjct: 413 LILLATFFIMPVFSTVPTCMLASMVVSLGVSLFADAA 449


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 257 NIIQTIIESITNALPIKLSRRTTPPK-KESPMKIETLQKFAPELVPKNTVE 406
           + +Q I+E + +A PIK  R+T  P+ + +  + E  +    + V KNTV+
Sbjct: 93  DFLQDIVEKVPDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVKKNTVK 143


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
 Frame = +2

Query: 329 PKKESPMK---IETLQKFAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVISMTEVSVTE 499
           PKKE+ +    +  LQ+ +   + K   EI+ I    LE+V+ + ++ N+I+ T+V VT 
Sbjct: 283 PKKENIIPKYYLRYLQRLSRTEINK---EIIEIEKLELEVVQFQMSIANLIN-TQVEVTN 338

Query: 500 TI 505
           TI
Sbjct: 339 TI 340


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +2

Query: 503 IAKNSSFKIPKMPLVNSEVLKNAIEKRKKSL--MKDASMNTNTDHDIAAE-LTKHVGTLR 673
           + K +SF+ P + +  + VL+ ++EKRK ++  +KD  M  N    I  E +  H  T+ 
Sbjct: 21  LMKRNSFRRPLLNMRCNSVLQYSLEKRKLTVQDLKDTRMELNNMIRILTEAMAAHEWTVD 80

Query: 674 KISL 685
            +++
Sbjct: 81  NVNI 84


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 28/132 (21%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
 Frame = +2

Query: 275 IESITNALPIKLSRRTTPPKKESPMKIETL-QKFAPELVPKNTVEIVSIPNQV--LEIVE 445
           +ES+  A+ + + +R    + +S +++  +      +LVP        +P  +  +E + 
Sbjct: 248 VESVALAVLVPILKRALAQRSQSMLRLTVIITDNLCKLVPDPAEASDFLPELIPDVERIA 307

Query: 446 AEKAVDNVISMTEVSVTETIAKNSSFKIPKMPLVNSEVLKNAIEKRKKSLMKDASMNTNT 625
              A+  V ++   ++T T+ K ++ +  K    NSE  K A++   K L +    NT+ 
Sbjct: 308 QTAAMPEVRALASHALT-TLNKAAAAQAAKAAN-NSE--KQALDSACKELREAVLKNTSV 363

Query: 626 DHDIAAELTKHV 661
            H++A  +  +V
Sbjct: 364 PHELANSIIDYV 375


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 712  SFFIKLFSYQRYLSQGSNVLSQLSGNIVIRV 620
            S FI LFS QR+ S  S   +  SG+I +R+
Sbjct: 2151 SDFIPLFSMQRWNSITSMFFAHASGSIALRI 2181


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 12/79 (15%)
 Frame = +2

Query: 509 KNSSFKIPKM-PLVNSEVL---------KNAIEKRK--KSLMKDASMNTNTDHDIAAELT 652
           KN +  +PK  PL+++E+L          NA E RK  +++ ++  + +  +H       
Sbjct: 316 KNITSLLPKQDPLISTEILVYNDLSHSLSNA-ESRKLCEAVGENVVVTSIREHSQLQTWV 374

Query: 653 KHVGTLRKISLIAEEFNKK 709
           K +  LR++ ++AEE N+K
Sbjct: 375 KKLPQLRQLPIVAEELNQK 393


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 277 RKYHKRVTHKVIKKD 321
           R YHK V+HK+++ D
Sbjct: 306 RSYHKEVSHKIVRID 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,578
Number of Sequences: 5004
Number of extensions: 45857
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)