Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a12
         (736 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    27   0.60 
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    27   0.60 
Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein...    23   7.4  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 0.60
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 684 FTNVF*SRAARKPVSIEDVWRFRPSNY*REPPRPAHQEAS-VSLSLSLDTALPSWIRN 514
           FTN   S+    P S+     F  S     P +  H E+  +S+S + DTA+PS I++
Sbjct: 396 FTNRAPSKEDLSPSSLSGTGPFGGSCQIHGPIQLPHSESEELSMSTAADTAVPSGIKS 453


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 0.60
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 684 FTNVF*SRAARKPVSIEDVWRFRPSNY*REPPRPAHQEAS-VSLSLSLDTALPSWIRN 514
           FTN   S+    P S+     F  S     P +  H E+  +S+S + DTA+PS I++
Sbjct: 396 FTNRAPSKEDLSPSSLSGTGPFGGSCQIHGPIQLPHSESEELSMSTAADTAVPSGIKS 453


>Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein
           protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 342 EFRSIVDNFLIRLGIWH 392
           E  ++ DNFL RL  WH
Sbjct: 73  ERANLRDNFLFRLNHWH 89


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 671,378
Number of Sequences: 2352
Number of extensions: 14414
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75260343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)