Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a12
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical ...    50   1e-06
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z36238-8|CAH04738.1|  448|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z36238-7|CAA85278.2|  506|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z54281-7|CAA91050.2|  202|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    28   6.0  
AC006636-2|AAF39797.1|  325|Caenorhabditis elegans Hypothetical ...    28   6.0  

>AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.2 protein.
          Length = 345

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
 Frame = +3

Query: 420 VADLKTNNTFHELKNSRNPVILYCH--GTAVAANFVSNLEELCQERGSEKLRLPDALVLE 593
           V D KT   + +    + PVI++ H  GT V+   V +L        S + + P  L+LE
Sbjct: 166 VEDTKTVYEWLKENCGKTPVIVWGHSMGTGVSCKLVQDL--------SREQQPPCGLILE 217

Query: 594 APFNNLKDEIAKHPLSKLVSWLPYFRI 674
           +PFNNLKD +  HP+  + SW+  F +
Sbjct: 218 SPFNNLKDAVTNHPIFTVFSWMNDFMV 244



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
 Frame = +3

Query: 198 VAVLPLMFRYNKTVQRKVVFSNCINFPRNLNYDSPSSCSV-TCGRNLNIEFRSIVDNFLI 374
           V  LP++  +     + + F N    P N +Y+  +S +V + GR+L++  +S       
Sbjct: 24  VIFLPILVYFLPRYTQFIFFLNFRRLP-NTDYNDLASNNVKSIGRSLHLPGKSG------ 76

Query: 375 RLGIWHILPNS---EIKDVADLKTNNTFHE-LKNSRNPVILYCHGTAVAANFVSNLE 533
           R+G+WHILPN    E +      T   F + +++S N +I Y HG +    F   +E
Sbjct: 77  RIGVWHILPNKLSLEWRTEGKHPTERDFDDMMRDSENQIIFYAHGNSFDRTFYHRVE 133


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 214 RGSTATWNTRTPAVSEAPVAKRSPKTMLRRKYST 113
           RGSTA   TR P  + AP A R+P    R   +T
Sbjct: 298 RGSTAAPGTRAPPATRAPPATRAPPATTRAPPAT 331


>Z36238-8|CAH04738.1|  448|Caenorhabditis elegans Hypothetical
           protein R74.8b protein.
          Length = 448

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 213 LMFRYNKTVQRKVVFSNCINFPRNLNYDSPSSCSVTCGRNLN 338
           LM R  K    ++V +  + +P  + YD  S   + C RNLN
Sbjct: 186 LMVRKKKFPVDELVNNEKLGYPLGVTYDEKSKYWIICDRNLN 227


>Z36238-7|CAA85278.2|  506|Caenorhabditis elegans Hypothetical
           protein R74.8a protein.
          Length = 506

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 213 LMFRYNKTVQRKVVFSNCINFPRNLNYDSPSSCSVTCGRNLN 338
           LM R  K    ++V +  + +P  + YD  S   + C RNLN
Sbjct: 186 LMVRKKKFPVDELVNNEKLGYPLGVTYDEKSKYWIICDRNLN 227


>Z54281-7|CAA91050.2|  202|Caenorhabditis elegans Hypothetical
           protein F46C5.2 protein.
          Length = 202

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = +3

Query: 420 VADLKTNNTFHELKNSRNPVILYCHGTAVAANFVSNLEELCQERGSEKLRLPDALVLEAP 599
           +ADL+ N    EL+  R   +L C  T      V N  + C +  S   RLP A   E  
Sbjct: 92  LADLEMNRRTSELRMRRVGAVLLCEDTFNQTTCVCNRRDKCNDIHS---RLPFATYAEGL 148

Query: 600 FNNL 611
           F  +
Sbjct: 149 FRGV 152


>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 418 SLISEFGSICQIPNLMRKLSTIERNSMLRFLPHVTLQ 308
           S++  F SI Q+  + + LSTIERN +   L    +Q
Sbjct: 195 SIVCNFLSIMQLKLMKKNLSTIERNLLFSTLASSVIQ 231


>AC006636-2|AAF39797.1|  325|Caenorhabditis elegans Hypothetical
           protein F40C5.1 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 14/105 (13%)
 Frame = +3

Query: 405 SEIKDVADLKTNNTFHELKNSRNPVILYCHGTAVAA------NFVSNLE--EL------C 542
           S+++ V + K  N+F++++NSRN  +   H  A AA      NF   +E  EL       
Sbjct: 152 SDMRCVVE-KIYNSFYDIQNSRNETLKIGHIEAHAAPVTWNCNFHQGIEKWELLAMGSDT 210

Query: 543 QERGSEKLRLPDALVLEAPFNNLKDEIAKHPLSKLVSWLPYFRIR 677
           +ER S   RL D L  +    +L ++I K+ LS  +  L    +R
Sbjct: 211 EERVSSAARLADILRKQGVRGSLVEKIHKNILSMFLKDLQNCGVR 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,889,731
Number of Sequences: 27780
Number of extensions: 302092
Number of successful extensions: 1078
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)