Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a11
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    30   0.30 
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.90 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.4  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    26   6.4  

>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
 Frame = +2

Query: 113 KVCTMFSDK*NLTVLF*KYGLL--GHAVYFADENILTV----KIFIKMGKLLSLLSRDES 274
           KV T FS   +LT++   + L+  G+  +FAD+N++TV        + G + S++  DES
Sbjct: 217 KVTTEFSQINDLTLIARAHQLVQEGYKYHFADKNLVTVWSAPNYCYRCGNVASVMKVDES 276

Query: 275 HCCSSPRYDIF---LDFENAAPTMTERDVY 355
                P + IF    D +   P   +R  Y
Sbjct: 277 ---LEPEFRIFSAVADEDRTVPPSRKRSEY 303


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -2

Query: 425 RHLYNTVSLLISSRILTGLFGHRRKHRVRSLWARHSRNPRIYHIEATSSNATRHAIKDSI 246
           + +Y T  L   S    G FGH +   +  L A   ++P I  ++ T  +A  H +KD +
Sbjct: 441 KEIYKTCFLTTES----GFFGHLKSIILSQLPAAVFKSPDIVSVKKTLEDARSHLLKDDL 496


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 65  YCLILFDCNRHNLA 24
           YC  LF+CN+H ++
Sbjct: 739 YCSFLFECNKHEIS 752


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 5   RLLELRRLGCVCYSQTKSNSRVV*LKSNILLINKRL 112
           ++++L R   V Y+  K + RV+ L   ILL N++L
Sbjct: 331 KVVDLNRKLIVGYNHFKHDPRVIRLHDKILLYNRQL 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,623
Number of Sequences: 5004
Number of extensions: 58005
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)