Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a11
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0102 - 28354880-28355056,28355159-28355376,28355634-283557...    31   1.2  
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985...    28   6.6  
03_06_0728 + 35768830-35769324,35769404-35769462,35770440-357705...    28   8.8  
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241...    28   8.8  

>11_08_0102 -
           28354880-28355056,28355159-28355376,28355634-28355712,
           28356451-28356519,28356602-28356681,28356818-28356925,
           28357103-28357169,28357894-28357959,28358042-28358119,
           28358198-28358250,28359542-28359575,28359851-28359865,
           28360082-28360109,28360628-28360716,28361688-28361810,
           28362192-28362296,28362381-28362485,28362924-28363139,
           28364656-28364845,28365193-28365418,28366096-28366162
          Length = 730

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 248 LSLLSRDESHCCSSPRYDIFLDFEN 322
           LSL++ DE+HCCS   +D   D++N
Sbjct: 227 LSLIAIDEAHCCSQWGHDFRPDYKN 251


>07_03_1512 +
           27288779-27289222,27298101-27298399,27298499-27298589,
           27298701-27298766,27299151-27302660,27311604-27312224
          Length = 1676

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 602 AWDSLHLPLGNPAIGAPPFEA*GSGCSSTVVYLRGVSQRAKHAP 471
           A+   H+P G  A+    F A   G  S   YL   ++ A++AP
Sbjct: 437 AFKKTHIPTGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP 480


>03_06_0728 +
           35768830-35769324,35769404-35769462,35770440-35770509,
           35770626-35770748,35770836-35770964,35771268-35771717
          Length = 441

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 371 VLLESEKILEEIQCYKGAGKEIREAIADPSRI 466
           V+ E  K+ EE+    GAG+E  EA  D S++
Sbjct: 94  VVGEKRKVPEEVAAAAGAGQEEEEAFDDESKL 125


>03_01_0307 +
           2414709-2414762,2415769-2415841,2416090-2416154,
           2416288-2416365,2416880-2416999,2418021-2418091,
           2418808-2418900,2419242-2419311,2420236-2420436,
           2421345-2421557,2422354-2422440,2422441-2422652,
           2422901-2423042,2423424-2423592,2424050-2424126,
           2424393-2424563,2425095-2425171,2425299-2425401,
           2426066-2426185,2426301-2426444,2426826-2426975,
           2427398-2427541,2427816-2427903,2428672-2428799,
           2429329-2429533,2429843-2430015,2430174-2430392,
           2430490-2430684
          Length = 1213

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 644 EILEFVLKFDEYKMKTPAIQNDFSYYRRS 730
           ++L+ +++ D  K    +I NDFS+Y+R+
Sbjct: 158 KLLDVLVQLDHLKNAKASIPNDFSWYKRT 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,299,260
Number of Sequences: 37544
Number of extensions: 379200
Number of successful extensions: 952
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)