Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a10
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    29   0.81 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   1.9  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    27   3.3  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   5.7  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    25   9.9  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   9.9  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   9.9  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 21/85 (24%), Positives = 41/85 (48%)
 Frame = +2

Query: 155 STSELTDEDSAILAENYGLLSNQMKSTTLKTRFAKSEQTLFTSNNMGLLSEDLDETPLRE 334
           S + + DE+    +E   L+SN ++S+T++T     + +     N  ++S D+ +    E
Sbjct: 524 SENTINDEELIDDSEFTSLMSNFLESSTVQTNKYLPKSSASPPANAPIVSSDVHK---NE 580

Query: 335 HATDKPNNLKERAFVYLNQKYKTPF 409
           +A       +  AFV    KY +P+
Sbjct: 581 NAGTARRAPQSGAFVASKAKYSSPY 605


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 134  VGFYVPFSTSELTDEDSAILAENYGLLSNQMKSTTLKTRFAKSEQTLF 277
            V F  PF  +++ +++  I  E  GLLS  +KS T+    +  +  L+
Sbjct: 1402 VKFIFPFIKNQMKNKNELIRQEFIGLLSYSIKSLTMVDAISDMQPLLY 1449


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 461 NYKSWAKSRFSKFVEF 508
           +Y  WA S FSKFVE+
Sbjct: 108 DYLCWAASHFSKFVEY 123


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 22/88 (25%), Positives = 34/88 (38%)
 Frame = +2

Query: 377 VYLNQKYKTPFQNQVYDLHMQAMDIPLRNYKSWAKSRFSKFVEFPVKMASFFQPSLYQIV 556
           VY    + +P QN  +            ++  + K   SKFVE   K      P  + ++
Sbjct: 401 VYSASPFDSPSQNAEWQ--KTPAGFQFSHHFGFGKLDASKFVEV-AKDWQVVNPQTW-LI 456

Query: 557 GPEAKQRDFYGGATNENDNKMKMKTTVT 640
            PE      +G   NE   +M  + TVT
Sbjct: 457 APEINVNKSFGSVNNETITEMVSEFTVT 484


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 146 VPFSTSELTDEDSAILAENYGLLSNQMKSTTL-KTRFAKS-EQTLFTSNNMGLLSEDLDE 319
           +P     LTDED+  +A     LS  + S +L  T  +KS   + F+ +++   S+ L  
Sbjct: 142 IPSDEDVLTDEDTEEVASIQPALSTSVSSLSLASTAMSKSASASEFSGSSVTKASKKLTS 201

Query: 320 TP 325
           +P
Sbjct: 202 SP 203


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = +2

Query: 257 KSEQTLFTSNNMGLLSEDLDETPLREHATDKPNNLKERAFVYLNQKYKTPFQNQVYDLHM 436
           K ++T+  + +  L  +  D + L +   DK N L  +  VYL++KY    Q Q   L +
Sbjct: 397 KPKETMPCTYDSSLADDHSDTSNLSK---DKANTLCAQCSVYLSEKY----QQQQSLLQL 449

Query: 437 QAMDIPLRNYKSWAK 481
           ++    L N K  AK
Sbjct: 450 ESNIQQLENEKKAAK 464


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 242 KTRFAKSEQTLFTSNNMGLLSEDLDETPLREHATDK 349
           K  F  S     TSN+   + EDLD++P  E   D+
Sbjct: 792 KQLFKPSNHENTTSNDDHAMDEDLDDSPEEETLKDE 827


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,564
Number of Sequences: 5004
Number of extensions: 57319
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)