Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a10
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0025 - 19341127-19341339,19341426-19341620,19341912-193420...    29   2.6  
02_05_0608 + 30329174-30329362,30329681-30329907,30330035-303301...    28   5.9  
05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928           28   7.8  
02_03_0121 + 15468894-15468906,15469008-15469193,15474157-154746...    28   7.8  

>11_06_0025 -
           19341127-19341339,19341426-19341620,19341912-19342088,
           19342505-19342672,19343533-19343574,19344129-19344214,
           19345218-19345545
          Length = 402

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 110 LLWYVKSNVGFYVPFSTSELTDEDSAILAE 199
           ++W +K  + ++VP  T EL +EDS  +++
Sbjct: 221 VMWAMKRLIRYFVPTETPELAEEDSLTMSQ 250


>02_05_0608 +
           30329174-30329362,30329681-30329907,30330035-30330190,
           30330893-30331078,30331184-30331368,30331571-30331602
          Length = 324

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 446 PLLAYEDHKLDFETEFYIFDSNIQMLFPLNC--WVCQLRALLKE 321
           P+L  + HK D    +Y+F+  +  L  LN   WV   R L+++
Sbjct: 258 PMLDKKKHKFDGPLHYYVFNCLLFSLLVLNIYWWVLMYRMLVEQ 301


>05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928
          Length = 244

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +2

Query: 449 IPLRNYKSWAKSRFSKFVEFPVKMASFFQPSLYQIVGPEA 568
           +P R Y+ +  S +S +++  ++ A +++P+L  +VG +A
Sbjct: 65  VPGRPYREYHTSDYSSWLQKHIQDAKYWRPALACVVGSKA 104


>02_03_0121 +
           15468894-15468906,15469008-15469193,15474157-15474650,
           15475090-15475521,15475597-15475821,15476065-15476346,
           15476432-15476704,15477680-15477805,15481010-15481288,
           15481313-15481588,15481670-15482113,15482200-15482397,
           15482574-15482732,15482832-15483085,15483164-15483316,
           15483395-15483683,15483769-15483807,15483913-15483951
          Length = 1386

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 446 DIPLRNYKSWAKSRFSKFVEFPVKMASFFQPSLYQIVGPEAKQR 577
           DIP    ++WA++R+ K V+  + M +     +Y+ +   AKQ+
Sbjct: 826 DIPHPRARNWARARYQKNVDGTIFMPNPDDQRVYEAIELVAKQQ 869


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,305,982
Number of Sequences: 37544
Number of extensions: 289089
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)