Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a10
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.1  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 92  YTTLLILLWYVKSNVGFYVPFSTSELTDEDSAILAENYG-LLSNQMKST 235
           Y++L   L Y +  VG  VPF+   +TD +S+   E +  ++ N +K T
Sbjct: 301 YSSLENTLKYYE--VGSNVPFNFKFITDANSSSTPEQFKVIIDNWIKGT 347


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 390 KNIKLRFKIKFMIFICKQWIFH 455
           K  ++ F + FM+F    WIF+
Sbjct: 466 KYSRIIFPVSFMLFNAIYWIFY 487


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 256 CKSCF*CSRFHLVT*KAIVFCQYCR 182
           C  CF C+++ +   K +  C  CR
Sbjct: 606 CWHCFNCTQYQIRDHKDVTQCISCR 630


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 209 LLSNQMKSTTLKTRFAKSEQTLF 277
           L+SNQ K  + + R AK   T+F
Sbjct: 266 LVSNQDKERSAEVRIAKVAFTIF 288


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 209 LLSNQMKSTTLKTRFAKSEQTLF 277
           L+SNQ K  + + R AK   T+F
Sbjct: 266 LVSNQDKERSAEVRIAKVAFTIF 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,581
Number of Sequences: 438
Number of extensions: 4013
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)