Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a09
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        26   0.33 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.1  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -2

Query: 661 AAAGSRVATDSHSPMDSRTGRTGTDTAHS--SGAYQPA*STTSLDQPQV*RAAANPKH 494
           +AA    A  +++   +    TG+   HS  S +  PA  TTS   P V  AAA+  H
Sbjct: 44  SAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMYPYVSAAAAHHHH 101


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 445 CVSIKAPIQCPPHCPLCALGLLQPVTPVVGLKRSYSKP 558
           C+S  API+ P H  LC    L  V  +  ++++ + P
Sbjct: 326 CIS-GAPIERPDHAVLCVYMGLSMVEAIKYVQQTTNSP 362



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 739 PLTW*GPQKPVPIGIVIVAPSCTGRSAAA 653
           P TW G    V   +V+   +C G S  A
Sbjct: 560 PFTWGGIGVVVLFAVVLAGATCLGSSIKA 588


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 38  LVKLTKNNTKFSSNKPASKQNQRK 109
           L+  +KNNT    +K  +K+N  K
Sbjct: 506 LINFSKNNTIVDISKLVNKRNNAK 529


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,862
Number of Sequences: 438
Number of extensions: 3604
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)