Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a06
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    28   1.2  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   2.1  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.7  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   4.7  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   8.3  

>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 70  VFRNFKNGRKRSTIKCTRCRWV 135
           +FRNF N  KR  I C  C WV
Sbjct: 325 LFRNFLNILKRMAIYCGACFWV 346


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 239 SFPQEIRVSLVSSSRIEDASRTACWFNFWSLMCQSTHL 126
           SFP E +VS++ +S ++ +     WF   + +C  TH+
Sbjct: 171 SFPSEPQVSVLFTSSVKRSPHGVSWF---ATICSETHI 205


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +2

Query: 248 WFMKRYAFKCGKLKFIRKLLN--WNQHQIIPLAYIWFCI 358
           WF   Y+   G    I   L   +   ++  L YIWFCI
Sbjct: 86  WFPASYSLTVGTFILIAGRLGDIYGHKKMFVLGYIWFCI 124


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -1

Query: 209 VSSSRIEDASRTA-CWFNFWSLMCQSTHLHRVHLIVDLFLPFLKFLNT 69
           ++SS +  A+R + CW + WSL C       +++++  FL F K LNT
Sbjct: 1   MASSYLSLAARLSQCWISPWSLCC-------LYILMQFFL-FTKDLNT 40


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -1

Query: 212 LVSSSRIEDAS---RTACWFNFWSLMCQSTHLHRVHLIVDLFLPFLKFLNT 69
           +V S   +D++   R   W   WSL     H +    + DLF  +  +LNT
Sbjct: 207 MVDSKSFKDSAVQLRNRTWLLHWSLFPLFNHANGCDTLCDLFF-YTPYLNT 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,402
Number of Sequences: 5004
Number of extensions: 63094
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)