Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a06
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376     29   3.7  
10_05_0013 + 7986281-7986434,7986664-7986743,7987583-7987656,798...    28   8.6  
04_03_0684 - 18670697-18670933,18671003-18671102,18671214-186712...    28   8.6  
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467...    28   8.6  

>03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376
          Length = 798

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 326 IIPLAYIWFCITKQPRWDCWKLFCFTRTARPVSPKSPL 439
           ++  +++W  + K  +  C  L  F R  +P  P++PL
Sbjct: 731 VLSRSWVWSGVVKLSKSSCTSLVHFVRALQPAPPEAPL 768


>10_05_0013 +
           7986281-7986434,7986664-7986743,7987583-7987656,
           7988186-7988252
          Length = 124

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 320 HQIIPL-AYIWFCITKQPRW 376
           H+ IP  AY+W+C  +QP W
Sbjct: 26  HRCIPRRAYLWWCRCRQPPW 45


>04_03_0684 -
           18670697-18670933,18671003-18671102,18671214-18671266,
           18671664-18671810,18671901-18672031,18673064-18673088,
           18673201-18673305,18673941-18674054,18674900-18674992,
           18675101-18675193,18675951-18676057,18676442-18676490,
           18677140-18677253,18677728-18677787,18677887-18677955,
           18679154-18679255,18679338-18679366,18679450-18679732,
           18680399-18680752
          Length = 754

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 660 IHQYIQNPRCAIFALSPHNA 719
           I QYI++P C I A++P NA
Sbjct: 176 IMQYIKHPSCIILAVTPANA 195


>01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,
            4675953-4676072,4676185-4676313,4676394-4676442,
            4676899-4676970,4677574-4677707,4677798-4677915,
            4678332-4678541,4678630-4678942,4679539-4679632,
            4679854-4679962,4680243-4680514,4680597-4680724,
            4680832-4681066,4681570-4681758,4681845-4682128,
            4682218-4682398,4682486-4682728,4682904-4682986,
            4683119-4683227,4687996-4688091,4688675-4688764,
            4688881-4689129,4689233-4689412,4690179-4690250,
            4691385-4691474,4691605-4691705,4691794-4691959
          Length = 1757

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 109  IKCTRCRWVDWHIRLQKLNQQAVLEASSM 195
            +KC + R VDWH+   ++  +A +   S+
Sbjct: 1389 LKCIQARLVDWHVANLEIQDRAAISGISL 1417


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,868,135
Number of Sequences: 37544
Number of extensions: 381466
Number of successful extensions: 911
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)