Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3a06
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC199170-6|ABO33264.1| 325|Caenorhabditis elegans Hypothetical ... 33 0.27
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 32 0.36
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 32 0.36
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 32 0.36
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 32 0.36
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 30 1.9
U41996-3|AAA83472.2| 362|Caenorhabditis elegans More of ms prot... 29 3.4
AF013952-1|AAC47749.1| 362|Caenorhabditis elegans mom-2 protein. 29 3.4
Z81049-5|CAE17733.2| 197|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AC199170-6|ABO33264.1| 325|Caenorhabditis elegans Hypothetical
protein T08D2.5 protein.
Length = 325
Score = 32.7 bits (71), Expect = 0.27
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = -1
Query: 335 KVLFGAGSSLTICG*ILIFHT*M---HIAS*TNTGSFPQEIRVSLVSS-SRIEDASRTAC 168
+++FGAGS+ G I I ++ + H S NT +F ++ S SS S +S C
Sbjct: 240 QMIFGAGSTFYKNGKIRILYSCINFIHFQSLLNTSTFTSWLQSSSFSSASSSSTSSEQCC 299
Query: 167 WFNFWSLMCQS 135
F F L+CQ+
Sbjct: 300 TFIFIYLLCQN 310
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +1
Query: 469 TALLALINTGYLKPISVNDI-ECESPI-EELERQKRDLQFDISMRCISIVRYLAEHME 636
+A L L+ PI+ N I + E I EE+ERQK+D Q +I C S++R L ++E
Sbjct: 757 SAPLILVEDHKDGPITSNQISDTERRISEEIERQKKDEQ-EIEKSCRSVIRDLLNYVE 813
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +1
Query: 469 TALLALINTGYLKPISVNDI-ECESPI-EELERQKRDLQFDISMRCISIVRYLAEHME 636
+A L L+ PI+ N I + E I EE+ERQK+D Q +I C S++R L ++E
Sbjct: 762 SAPLILVEDHKDGPITSNQISDTERRISEEIERQKKDEQ-EIEKSCRSVIRDLLNYVE 818
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +1
Query: 469 TALLALINTGYLKPISVNDI-ECESPI-EELERQKRDLQFDISMRCISIVRYLAEHME 636
+A L L+ PI+ N I + E I EE+ERQK+D Q +I C S++R L ++E
Sbjct: 757 SAPLILVEDHKDGPITSNQISDTERRISEEIERQKKDEQ-EIEKSCRSVIRDLLNYVE 813
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +1
Query: 469 TALLALINTGYLKPISVNDI-ECESPI-EELERQKRDLQFDISMRCISIVRYLAEHME 636
+A L L+ PI+ N I + E I EE+ERQK+D Q +I C S++R L ++E
Sbjct: 762 SAPLILVEDHKDGPITSNQISDTERRISEEIERQKKDEQ-EIEKSCRSVIRDLLNYVE 818
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 338 AYIWFCITKQPRWDCWKLFCFTRTARPVSPKSP 436
AY + I R DCW+LF + T R ++ +P
Sbjct: 1034 AYNHYAIINGTRGDCWRLFVYELTCRMLNGANP 1066
>U41996-3|AAA83472.2| 362|Caenorhabditis elegans More of ms protein
2 protein.
Length = 362
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 335 LAYIWFCITKQPRWDCWKLFCFTRTARPVSPKSPLICSN 451
LA I+F + D W L T T+ S SP++C N
Sbjct: 9 LAIIYFLVFAPKSADAWWLLSKTDTSSANSGSSPILCKN 47
>AF013952-1|AAC47749.1| 362|Caenorhabditis elegans mom-2 protein.
Length = 362
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 335 LAYIWFCITKQPRWDCWKLFCFTRTARPVSPKSPLICSN 451
LA I+F + D W L T T+ S SP++C N
Sbjct: 9 LAIIYFLVFAPKSADAWWLLSKTDTSSANSGSSPILCKN 47
>Z81049-5|CAE17733.2| 197|Caenorhabditis elegans Hypothetical
protein C48D1.5 protein.
Length = 197
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -3
Query: 324 WCWFQFNNLRINFNFPHLNAYRFINQYGQFSTRN*SFFSKL 202
W F+ +L I + FP +N Y F+ ++N F ++
Sbjct: 103 WDNFKQRHLEIPYEFPEVNGYIFVEDLSPICSKNGILFLRI 143
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,566,244
Number of Sequences: 27780
Number of extensions: 349113
Number of successful extensions: 949
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -