Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a03
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    30   0.32 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   1.3  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   3.9  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    26   6.9  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    26   6.9  

>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 16/76 (21%), Positives = 39/76 (51%)
 Frame = +2

Query: 515 TFRQGEDFSNRIAWYFKRQGFKSGEVIALFMETQPEYIFVWLGLAKMKVTTALVNTNLRG 694
           T+RQ ++ SN +A +  + G + G+V+ ++     + +   +G+ K   T ++++     
Sbjct: 314 TYRQIDESSNILAHHLVKNGIERGDVVMVYAYRGVDLVVAVMGVLKAGATFSVIDPAYPP 373

Query: 695 QQLIHCLRIVGCKAVV 742
            + I  L +   +A+V
Sbjct: 374 ARQIIYLSVAKPRALV 389


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 512  LTFRQGEDFSNRIAWYFKRQGFKSGEVIALFMETQPEYIFVWLGLAK 652
            LT+ +  + +N++A   K  GF+ G +IA++ +   E     L + K
Sbjct: 2752 LTYSELNERANKLAHNLKSYGFRVGSIIAVYFDKCIEAFISMLAILK 2798


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -2

Query: 197 RPLQIEPLSSLTSWYLRFYLIWCISFTPEF 108
           +PL ++ +++  SW+L  +++W +  T  F
Sbjct: 125 KPLTVDNVTAFFSWWLVSHIVWIVVGTTTF 154


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +2

Query: 335 WIYLWKKTHKRDFLGLRVLLATMFRIWRWEKQGQSVVSRWAEIAKL 472
           +I +++K H  D   L +L + + + WR+ + G     RW ++A +
Sbjct: 442 YISIYQKNHVHDSPALDLLQSLITKAWRYAELG-----RWLDVATI 482


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 401 LSLTVPLDLENPSCASSSKGKSIGIYHRSIDKLPASQQRSSWSES 267
           L L   + L+N   A    G+      RS+ + PA  +RSS S S
Sbjct: 719 LELLQEVLLQNEEAADLDDGEDTSFGSRSLSRAPAKAKRSSGSLS 763


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,632
Number of Sequences: 5004
Number of extensions: 68383
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)