Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3a03
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0577 + 4280590-4281225,4281749-4282102,4282214-4282412,428... 37 0.016
06_03_0983 - 26559772-26559915,26560149-26560251,26560335-265605... 37 0.020
06_03_0639 + 23055223-23055678,23055788-23056627 35 0.083
04_04_0559 - 26234106-26235169,26235437-26235452 32 0.58
03_02_0482 + 8798931-8799024,8799118-8799253,8799435-8799506,879... 31 1.3
07_03_1177 - 24574682-24574852,24575047-24575618,24575711-245760... 29 4.1
04_03_0972 + 21347212-21347284,21347966-21348009,21348153-213482... 29 5.4
03_05_1069 + 30118930-30120120 29 5.4
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 28 9.5
06_01_0407 + 2901321-2901739,2902673-2902825,2902899-2902981,290... 28 9.5
02_04_0402 + 22618998-22619043,22619206-22619345,22620067-226201... 28 9.5
>02_01_0577 +
4280590-4281225,4281749-4282102,4282214-4282412,
4284991-4285204,4285299-4285401,4285481-4285639
Length = 554
Score = 37.1 bits (82), Expect = 0.016
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +2
Query: 515 TFRQGEDFSNRIAWYFKRQGFKSGEVIALFMETQPEYIFVWLGLAKMKVTTALVNTNLRG 694
T+ + E S R A +R G G+V+ + PE+ F +LG A++ T N
Sbjct: 54 TYAEVESASRRAAAGLRRMGVGKGDVVMSLLRNCPEFAFSFLGAARLGAATTTANPFYTP 113
Query: 695 QQLIHCLRIVGCKAVV 742
++ G + +V
Sbjct: 114 HEVHRQAEAAGARVIV 129
>06_03_0983 -
26559772-26559915,26560149-26560251,26560335-26560548,
26563352-26563550,26564509-26564862,26565430-26566086
Length = 556
Score = 36.7 bits (81), Expect = 0.020
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +2
Query: 515 TFRQGEDFSNRIAWYFKRQGFKSGEVIALFMETQPEYIFVWLGLAKMKVTTALVNTNLRG 694
++ + E+ S R A +R G G+V+ + PE+ F +LG A++ T N
Sbjct: 58 SYGEVEELSRRAAAGLRRLGVGKGDVVMSLLRNCPEFAFTFLGAARLGAATTTANPFYTP 117
Query: 695 QQLIHCLRIVGCKAVV 742
++ G + +V
Sbjct: 118 HEIHRQASAAGARVIV 133
>06_03_0639 + 23055223-23055678,23055788-23056627
Length = 431
Score = 34.7 bits (76), Expect = 0.083
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = -1
Query: 303 PSVATALIMVGEPRRSHPSPAVVSAMDVRIIPLHRSASSNRTPLFSDI----LVLEILFD 136
P A + VGE R +PA+ A IP SA+ P+ +++ L ++I D
Sbjct: 175 PGAAQFMTAVGEIARGRAAPALAPAWGRDAIPCPPSAAVGPLPVPTELRLQYLAMDISTD 234
Query: 135 LVHIFYTRIL-*TNKQCASFNVTIA 64
+ F R L T +C++F V IA
Sbjct: 235 YIDHFKARFLEQTGHRCSAFEVLIA 259
>04_04_0559 - 26234106-26235169,26235437-26235452
Length = 359
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 146 ISSTRMSEKRGVRFEEAERCKGIILTSIALTTAGLGWLLRGSPTMMSAVA 295
+SS ++ +K G E+ R GI+ + L+T L WL+ S T S A
Sbjct: 10 VSSNQLDDKDGREEEQVVRGLGILPAQLELSTKELPWLVGDSATQRSRFA 59
>03_02_0482 +
8798931-8799024,8799118-8799253,8799435-8799506,
8799583-8799654,8799798-8799869,8800133-8800204,
8800530-8800627,8800892-8801062,8801141-8801473,
8802494-8802739,8802884-8803017,8803132-8803344
Length = 570
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 278 MMSAVATLGAYLLTGDRYQW-IYLWKKTHKRDFLGLRVLL 394
++SAVAT+GA LL W +L+K K+D G RV L
Sbjct: 221 VISAVATVGALLLVALMCFWGCFLYKNFGKKDIHGFRVEL 260
>07_03_1177 -
24574682-24574852,24575047-24575618,24575711-24576068,
24576108-24576152
Length = 381
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +2
Query: 455 AEIAKLYPEKKAFIMGDRALTFRQGEDFSNRIAWYFKRQGFKSGEVIALFMETQPEYI 628
+ + +YPE K + +R + +R G+ F ++ KR+G+ G ++ +P +I
Sbjct: 181 SRVVGIYPEIKNPVFVNRQVRWRDGKKFEDKFVAALKRRGY-GGRYMSPAWAARPVFI 237
>04_03_0972 +
21347212-21347284,21347966-21348009,21348153-21348237,
21348810-21349358,21350291-21350416,21350772-21350936,
21351243-21351310,21351529-21351618,21351740-21351830,
21352214-21352812
Length = 629
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 454 GGNSEAVSGKEGFYHGG 504
GG + AV+G+EG+Y+GG
Sbjct: 553 GGLARAVAGEEGYYYGG 569
>03_05_1069 + 30118930-30120120
Length = 396
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 251 GWLLRGSPTMMSAVATLGAYLLTGDRYQWIYLWKK 355
G +LRG + +A G+ LL+G IY+W++
Sbjct: 259 GGVLRGHKKAVFCLAAAGSLLLSGSADNTIYVWRR 293
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +1
Query: 349 EEDAQEGFSRSKGTVSDNVQDMALGKTRPVSGVKVGGNSEAVSGKEGFYHGGQGSHLSS 525
+EDA F+R TV + D+ L + R ++ G V G GG GS L S
Sbjct: 96 KEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVG---GGTGSGLGS 151
>06_01_0407 +
2901321-2901739,2902673-2902825,2902899-2902981,
2903081-2903180,2904580-2904693,2905292-2905434,
2905825-2905919
Length = 368
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 663 VTFILAKP-SHTKMYSGCVSMNRAITSPLLK 574
++ +LAK SHT+ Y GC+ T P LK
Sbjct: 221 LSLLLAKERSHTQTYIGCMKKGPVFTDPKLK 251
>02_04_0402 +
22618998-22619043,22619206-22619345,22620067-22620149,
22620234-22620438,22620524-22620592,22621099-22621188
Length = 210
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 352 EDAQEGFSRSKGTVSDNVQDMALGKTRPVSGVKVGGNSEAVSGKEGFYHGGQGSHLSSG 528
++ +E F ++ GT+ +QD + G+KVG AV G GG GS G
Sbjct: 154 QNVEEAFIKTAGTIYKKIQDGVFDVSNESYGIKVG---YAVPNASG---GGAGSSSQGG 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,794,457
Number of Sequences: 37544
Number of extensions: 454434
Number of successful extensions: 1373
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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