Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3a03
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical p...    93   2e-19
U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical pr...    83   3e-16
U41028-1|AAA82354.1|  532|Caenorhabditis elegans Hypothetical pr...    36   0.032
AF101315-2|AAC69228.1|  990|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z68342-2|CAA92772.2|  424|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical
           protein F28D1.9 protein.
          Length = 684

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
 Frame = +2

Query: 278 MMSAVATLGAYLLTGDRYQWIYLWKKTHKRDFLGLRVLLATMFRIWRWEKQGQSVVSRWA 457
           +++ V  L   ++ GD   +IY    T  RD  GL +++     +W    Q + +   + 
Sbjct: 60  ILAGVLILYITVVHGD---FIYRSYLTLNRDLTGLALIIEVKIDLWWRLHQNKGIHELFL 116

Query: 458 EIAKLYPEKKAFI--MGDRALTFRQGEDFSNRIAWYFKRQGFKSGEVIALFMETQPEYIF 631
           +I K  P K A I    +   T+ +     NR A YF+  G++SG+V+AL+ME   E++ 
Sbjct: 117 DIVKKNPNKPAMIDIETNTTETYAEFNAHCNRYANYFQGLGYRSGDVVALYMENSVEFVA 176

Query: 632 VWLGLAKMKVTTALVNTNLRGQQLIHCLRIVGCKAVV 742
            W+GLAK+ V TA +N+NL+ +QL+HC+     KA++
Sbjct: 177 AWMGLAKIGVVTAWINSNLKREQLVHCITASKTKAII 213


>U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical
           protein D1009.1a protein.
          Length = 655

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 42/131 (32%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
 Frame = +2

Query: 356 THKRDFLGLRVLLATMFRIWRWEKQGQSVVSRWAEIAKLYPEKKAFIM--GDRALTFRQG 529
           T  RDF GL++L++    I    K+ + +   +    K +P K A I     R LT+++ 
Sbjct: 54  TLPRDFAGLKLLISVKSTIRGLFKKDRPIHEIFLNQVKQHPNKVAIIEIESGRQLTYQEL 113

Query: 530 EDFSNRIAWYFKRQGFKSGEVIALFMETQPEYIFVWLGLAKMKVTTALVNTNLRGQQLIH 709
              +N+ A  +  +G+K G+V+ALFME   ++  +WLGL+K+ V +A +N+NL+ + L H
Sbjct: 114 NALANQYANLYVSEGYKMGDVVALFMENSIDFFAIWLGLSKIGVVSAFINSNLKLEPLAH 173

Query: 710 CLRIVGCKAVV 742
            + +  CK+ +
Sbjct: 174 SINVSKCKSCI 184


>U41028-1|AAA82354.1|  532|Caenorhabditis elegans Hypothetical
           protein C25G6.3 protein.
          Length = 532

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 506 RALTFRQGEDFSNRIAWYFKRQGFKSGEVIALFMETQPEYIFVWLGLAKMKVTTALVN 679
           R +T+ +  D S R A Y    G K+G+ I + ME   EY+   LG   +     L+N
Sbjct: 113 RCVTYEELVDGSKRTANYMSHHGVKNGDRILMCMENTVEYVLYQLGGFLLGAIPVLIN 170


>AF101315-2|AAC69228.1|  990|Caenorhabditis elegans Hypothetical
           protein T22H9.3 protein.
          Length = 990

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 488 AFIMGDRALTFRQGEDFSNRIAWYFKRQG 574
           A ++ DRA+  RQ E+F +R++ Y +  G
Sbjct: 545 AIVVFDRAIDMRQAENFCDRLSCYCRENG 573


>Z68342-2|CAA92772.2|  424|Caenorhabditis elegans Hypothetical
           protein F38E11.3 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 450 LDTTDWPCFSQRHILNIVANSTLRPRKSLLC 358
           L+   W CFSQ+ + N  +   L P K LLC
Sbjct: 325 LEEMRWACFSQQMLNNSRSVCGLSPEKLLLC 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,418,669
Number of Sequences: 27780
Number of extensions: 370648
Number of successful extensions: 976
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)