Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3a02
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 29 0.33
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 27 1.8
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 26 3.1
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 3.1
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 5.4
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 25 5.4
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 7.2
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.2
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 25 7.2
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 29.5 bits (63), Expect = 0.33
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +3
Query: 153 KDSKIIDEVKASEEKARKLFEGVPDINNIDXXKLKEVINKMAAEQKKNVEELTTMLEKQP 332
KD K E K S+E + K E P ++ K KE NK + KK+ ++ K+P
Sbjct: 215 KDKKEKKEGKPSQEASVKSVEKAP--KGLEGAK-KEKQNKKEKKDKKDKKDKKEKAPKEP 271
Query: 333 PK 338
PK
Sbjct: 272 PK 273
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 252 LKEVINKMAAEQKKNVEELTTMLEKQ 329
LKE+ K+ +Q+KN E++ T+ +K+
Sbjct: 242 LKEIHAKVTQQQRKNTEDVLTLRDKK 267
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 3.1
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +3
Query: 117 GKNSVDNIIKWMKDSKIIDEVKASEEKARKLFEGVPDINNIDXXKLKEVINKMAAEQKKN 296
G NSVD++++ K ++ E + RKL+ + L NK+ +E +
Sbjct: 296 GLNSVDSLVENAKALPLVGEYLSDYISHRKLYSSETQSQRLKREVLD--ANKIYSESVVD 353
Query: 297 VEELTTMLEKQPPKVLDALQ 356
+++ T++E+ L LQ
Sbjct: 354 LDKCRTLVEETIADHLQFLQ 373
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.2 bits (55), Expect = 3.1
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 162 KIIDEVKASEEKARKLFEGVPDINNIDXXKLKEVINKMAAEQKKNVEELTTMLEKQPPKV 341
K +DE+ E K +KL+ G + +L++ +M E+ + + ++ +V
Sbjct: 316 KAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEV 375
Query: 342 LD-ALQAGASAF 374
D L+A SAF
Sbjct: 376 DDERLKAEFSAF 387
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +3
Query: 120 KNSVDNI---IKWMKDSKIIDEVKASEEKARKLFEGVPDINNI 239
K V+NI + + D K+ +KA EKARK+ V D +N+
Sbjct: 88 KPKVENIRYEVNEVIDKKVAPCIKAFNEKARKIGSKVLDGDNL 130
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 5.4
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 258 EVINKM-AAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKAALEKK 395
+VI+K+ AA K+N E + +E + LDA +AG F L KK
Sbjct: 462 DVISKLYAAHHKENGESIGVDVECENDGTLDAKEAG--IFDVLLAKK 506
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 258 LSIYXXLYC*YPERLRTTFAP 196
L +Y YC Y +RT FAP
Sbjct: 399 LFVYYMRYCTYKSLMRTQFAP 419
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 7.2
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 153 KDSKIIDEVKASEEKARKLFEGVPDINNIDXXKLKEVINKMAAEQKKNVE-ELTTMLEKQ 329
KDS + V ++ K+F+ + + K ++++ K AE++ + E T LE++
Sbjct: 84 KDSSKKEPVVVPKKGTPKIFQENHKVKKVKSPKKEKLVGKNPAEKEDTTDVEDTQKLEQK 143
Query: 330 PPKVLDALQAGASAFKAAL 386
+L+ +S AA+
Sbjct: 144 HSTTPSSLKMKSSISLAAI 162
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 220 TPSNNFRAFSSEAFTSSIILESFIHLIMLSTLFFPSFCSFSKNWS 86
T +N F F FT+ + ++I L + L+ + +S+NWS
Sbjct: 468 TLTNGFTVFVGHTFTAGNFIAAYITLPIFLVLYV-AHKLWSRNWS 511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,990
Number of Sequences: 5004
Number of extensions: 26807
Number of successful extensions: 72
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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