Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3a02
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0059 - 11778739-11780998,11781744-11781751 31 0.78
04_01_0213 - 2692253-2694562 31 0.78
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 29 1.8
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 29 3.1
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768... 28 4.1
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 28 4.1
06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932... 28 5.5
>08_02_0059 - 11778739-11780998,11781744-11781751
Length = 755
Score = 30.7 bits (66), Expect = 0.78
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Frame = +3
Query: 135 NIIKWMKDSKIID---EVKASEEKARKLFEGVPDINNIDXXKLK-------EVINKMAAE 284
++++ M + K++D + K EEKARKL + + ++NN+ LK + + +
Sbjct: 542 SMLRRMVNLKLLDVTIQEKLKEEKARKLSDNLNNLNNLTTLILKGVDLPISSIFTAPSLQ 601
Query: 285 QKKNVEELTTMLEKQPPKVLDALQAGASAFK 377
K +E T+L P +D + S F+
Sbjct: 602 FLKTIELTGTILLTTPSPEIDKMTTSPSDFQ 632
>04_01_0213 - 2692253-2694562
Length = 769
Score = 30.7 bits (66), Expect = 0.78
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 195 KARKLFEG-VPDINNIDXXKLKEVINKMAAEQKKNVEELTTMLEKQP 332
K R L+EG + +N I +L+ +N + E KKN+ +L EKQP
Sbjct: 560 KLRSLYEGALKALNEIKGNQLQSSVNN-SVEGKKNLAQLLIDKEKQP 605
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 29.5 bits (63), Expect = 1.8
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = +3
Query: 105 LQKDGKNSVDNI--IKWMKDSKIID----EVKASEEKARKLFEGVPDINNIDXXKLKEVI 266
L++ G N++ I + KD +I +V+AS + G P + L +I
Sbjct: 44 LKRVGVNTIPGIEEVNIFKDDVVIQFLNPKVQASIGANTWVVSGTPQTKKLQDL-LPSII 102
Query: 267 NKMAAEQKKNVEELTTMLEKQPPKVLDALQAGASA 371
N++ + N+ L +KQ P +AGASA
Sbjct: 103 NQLGPDNLDNLRRLAEQFQKQAPGA-SGEEAGASA 136
>06_01_0584 -
4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 153 KDSKIIDEVKASEEKARKLFEGVPDINNID 242
KDSK+ ++K K R L G P NN+D
Sbjct: 393 KDSKLFGQLKEYHTKHRVLLTGTPVQNNLD 422
>10_04_0022 +
7687383-7687670,7688479-7688556,7689456-7689535,
7689876-7690095,7690444-7690677
Length = 299
Score = 28.3 bits (60), Expect = 4.1
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +3
Query: 99 EKLQKDGKNSV-DNIIKWMKDSKIIDEVKAS-EEKARKLFEGVP-DINNIDXXKLKEVIN 269
E+L + + S+ N+ + I +E+K EE ++LF+ V + L+E +
Sbjct: 161 EELARRVEESIRKNVEDRLNSEDIKNEIKRRVEEGIKQLFDEVDAQLQKEKETALREARH 220
Query: 270 KMAAEQKKNVEELTTMLEKQPPKVLDA 350
K A ++++ EEL MLE+ KV +A
Sbjct: 221 K-AEQERREREELDRMLEENRRKVEEA 246
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 28.3 bits (60), Expect = 4.1
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Frame = +3
Query: 105 LQKDGKNSVDNI--IKWMKDSKIID----EVKASEEKARKLFEGVPDINNIDXXKLKEVI 266
L++ G N++ I + KD +I +V+AS + G P + L +I
Sbjct: 483 LKRVGVNNIPGIEEVNIFKDDVVIQFQNPKVQASIGANTWVVSGTPQTKKLQDL-LPTII 541
Query: 267 NKMAAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKA 380
N++ + N+ L +KQ P +AGASA A
Sbjct: 542 NQLGPDNLDNLRRLAEQFQKQVP----GAEAGASAGNA 575
>06_03_1085 +
27491735-27492754,27492854-27492978,27493088-27493232,
27493328-27493591
Length = 517
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +3
Query: 153 KDSKIIDEVKASEEKA-----RKLFEGVPDINNIDXXKLKEVINKMAAEQKKNVEE 305
++S +D++K E KA K+ E + D D K++ AAE++K VEE
Sbjct: 49 EESNFLDDLKDGERKALAELRAKVEEAIVDGKLFDDGKVEAKKKAAAAEEEKAVEE 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,892,427
Number of Sequences: 37544
Number of extensions: 151180
Number of successful extensions: 458
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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